Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.0e-244 849.7 462 100.0
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 7.0e-185 651.0 517 76.4
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.7e-149 531.9 512 64.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 4.9e-146 521.9 516 61.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.5e-136 489.2 489 61.8
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.8e-131 471.9 511 58.9
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.4e-124 449.9 424 65.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.9e-121 440.3 519 55.7
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 2.4e-121 439.9 495 59.0
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.1e-120 436.8 496 55.4
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-118 431.0 517 53.8
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.3e-118 429.5 500 55.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 3.3e-118 429.5 515 55.7
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.3e-118 429.1 517 53.6
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.4e-116 423.3 516 53.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 9.0e-116 421.4 515 53.8
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.2e-115 421.0 507 56.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 5.5e-113 412.1 500 54.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.3e-111 406.8 503 56.1
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.0e-111 406.4 505 54.9
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.1e-111 405.6 510 53.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.5e-110 404.1 507 53.6
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 3.7e-109 399.4 512 53.1
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.0e-107 393.7 526 52.1
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-107 393.3 480 52.1
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.4e-107 392.9 498 51.2
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 3.8e-106 389.4 476 55.5
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 8.4e-106 388.3 523 51.4
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.4e-105 387.5 499 50.3
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.2e-105 386.0 503 51.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.2e-105 386.0 481 52.2
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 5.5e-105 385.6 514 51.2
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 9.3e-105 384.8 526 51.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.8e-103 380.6 503 52.1
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.3e-103 380.2 503 51.9
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.9e-103 379.4 503 48.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 5.7e-102 375.6 504 52.2
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.8e-101 373.2 519 52.4
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 6.9e-100 368.6 499 47.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 7.6e-99 365.2 510 48.8
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 3.8e-98 362.8 496 48.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.6e-96 357.5 499 50.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 4.6e-96 355.9 522 47.3
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.8e-95 354.0 499 47.1
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.0e-95 353.2 499 48.3
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.1e-94 351.3 508 48.6
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.5e-94 350.1 512 47.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.3e-94 349.7 522 49.6
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.7e-94 349.0 494 46.6
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 4.1e-92 342.8 488 51.6
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.0e-91 340.5 493 50.7
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.4e-91 339.7 501 50.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.0e-90 338.2 492 47.6
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 5.0e-90 335.9 508 47.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.9e-89 334.0 452 51.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.5e-89 333.6 479 49.9
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 5.5e-89 332.4 522 45.8
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.2e-88 331.3 496 45.4
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.6e-88 330.9 500 45.0
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.1e-88 330.5 512 46.5
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.4e-87 327.8 527 44.2
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.1e-86 324.7 499 46.9
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.2e-85 318.5 508 45.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 8.2e-85 318.5 504 45.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-84 317.4 507 45.2
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.6e-83 313.5 487 47.4
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.1e-81 308.1 502 45.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.2e-80 304.7 525 43.2
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.1e-80 303.9 497 44.9
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.7e-80 302.8 506 47.4
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 7.9e-80 302.0 519 46.8
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.4e-79 301.2 496 42.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.8e-79 300.8 513 45.6
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.6e-78 297.0 391 48.1
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.3e-77 294.7 504 44.6
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.1e-76 291.6 507 42.2
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 3.1e-76 290.0 399 50.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.3e-76 289.3 530 43.6
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.9e-75 285.8 420 48.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.0e-74 285.0 490 44.3
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.0e-74 285.0 484 41.9
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.2e-74 283.9 439 48.7
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.9e-74 283.5 508 42.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.8e-74 283.1 515 41.2
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.8e-74 283.1 437 48.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 5.0e-74 282.7 495 42.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-73 281.6 480 43.5
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.5e-73 280.4 525 42.9
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 7.2e-73 278.9 529 42.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.2e-72 278.1 490 42.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.6e-72 277.7 430 48.8
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.6e-72 276.6 487 43.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.4e-71 274.6 481 45.7
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 6.7e-71 272.3 143 96.5
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.5e-70 271.2 481 43.5
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.4e-70 269.6 436 47.9
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.8e-69 266.9 395 44.8
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.8e-69 266.2 483 42.4
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.2e-67 261.5 425 43.5
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 4.5e-67 259.6 464 45.7
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.2e-66 257.3 459 40.3
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 5.0e-66 256.1 497 41.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.6e-64 251.1 484 40.5
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.3e-63 247.3 429 42.2
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 2.3e-63 247.3 494 40.7
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 7.5e-62 242.3 500 39.0
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 9.8e-62 241.9 416 41.6
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.7e-61 241.1 451 43.2
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.4e-60 237.3 477 41.7
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 9.1e-60 235.3 521 37.6
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.0e-59 234.2 388 45.4
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 2.3e-58 230.7 270 53.0
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 3.8e-58 229.9 460 40.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.6e-56 224.6 504 40.7
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.0e-56 222.2 460 37.0
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.0e-55 221.9 488 41.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.8e-55 219.2 407 38.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 4.4e-54 216.5 399 42.1
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 7.5e-54 215.7 397 39.0
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.2e-53 214.2 344 42.7
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 3.7e-53 213.4 403 39.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.4e-52 211.5 408 38.2
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-52 210.7 406 38.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 5.4e-52 209.5 407 41.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 5.4e-52 209.5 406 38.9
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-51 208.4 410 38.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.7e-51 207.2 410 38.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.3e-50 204.9 478 36.0
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.7e-50 204.5 364 41.8
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.0e-50 203.0 406 40.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.5e-49 200.7 439 41.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.0e-47 193.7 394 39.1
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 4.9e-45 186.4 424 39.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.0e-43 181.0 456 34.9
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 3.9e-42 176.8 391 38.9
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 2.8e-40 170.6 216 48.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-39 168.3 407 34.4
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.3e-39 167.5 417 34.1
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 3.1e-39 167.2 405 33.8
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.8e-39 166.0 405 33.6
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.2e-37 161.0 376 33.5
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.9e-36 157.9 131 67.2
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.9e-36 157.9 434 32.5
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.7e-34 151.4 175 48.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.6e-32 144.8 138 55.8
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 8.1e-32 142.5 197 46.2
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-31 142.1 141 66.7
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.6e-30 137.5 425 29.9
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.8e-30 136.3 119 59.7
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.4e-28 131.7 352 34.1
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 2.4e-28 131.0 298 39.6
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 5.1e-26 123.2 507 31.0
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 5.1e-26 123.2 295 33.6
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.6e-24 118.2 501 27.9
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.0e-22 111.3 184 44.6
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.3e-18 97.8 521 26.9
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 3.6e-16 90.5 241 29.9
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 4.7e-16 90.1 341 28.4
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.0e-15 87.0 227 32.2
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.2e-13 81.3 412 26.5
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 3.8e-13 80.5 54 68.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-12 78.6 197 28.9
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.4e-12 78.6 361 27.4
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.4e-12 77.8 379 25.3
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.1e-11 74.7 218 29.4
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.0e-11 73.2 350 27.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.8e-11 72.8 271 27.3
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.3e-10 72.0 302 29.1
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 2.3e-10 71.2 153 35.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 5.1e-10 70.1 72 45.8
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 5.1e-10 70.1 148 34.5
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 3.3e-09 67.4 104 45.2
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 6.2e-08 63.2 268 27.6
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-07 62.4 43 65.1
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 5.3e-07 60.1 65 46.2


User provided reference genes

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