Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.6e-111 406.4 252 100.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 3.6e-111 405.2 252 99.6
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.2e-75 285.8 247 70.9
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 6.1e-74 281.6 253 74.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 2.8e-71 272.7 251 68.1
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.1e-70 270.8 250 59.2
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.4e-70 270.4 252 69.0
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 2.5e-67 259.6 252 69.4
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 5.5e-67 258.5 255 72.5
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 5.5e-67 258.5 255 72.5
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 9.4e-67 257.7 250 68.8
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.6e-66 256.9 252 61.1
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.5e-64 250.4 253 68.0
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 3.3e-64 249.2 252 65.5
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.3e-63 247.3 254 59.4
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.7e-63 246.9 251 64.9
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 2.2e-63 246.5 255 57.6
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.4e-62 243.8 252 61.5
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.1e-62 242.7 251 67.3
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 4.1e-62 242.3 250 67.2
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.2e-61 240.7 258 64.7
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 5.9e-61 238.4 253 61.7
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 7.7e-61 238.0 250 65.6
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 7.7e-61 238.0 253 61.7
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.0e-60 237.7 249 58.6
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 1.3e-60 237.3 244 69.3
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.1e-59 234.2 250 54.4
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.1e-59 234.2 252 64.7
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.9e-59 233.4 252 60.3
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.2e-58 230.7 250 54.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 1.6e-58 230.3 260 63.8
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.6e-58 230.3 260 63.8
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.0e-57 227.6 249 53.4
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 3.0e-57 226.1 254 52.8
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 3.9e-57 225.7 248 63.3
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 5.2e-57 225.3 250 62.8
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.1e-56 224.2 247 55.1
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 2.0e-56 223.4 222 68.5
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.0e-56 223.4 258 63.2
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.4e-56 222.2 251 54.2
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 9.7e-56 221.1 257 61.9
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.3e-55 220.7 254 60.6
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.7e-55 220.3 260 53.1
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.7e-55 220.3 259 52.9
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 2.8e-55 219.5 257 61.5
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.8e-55 219.5 222 68.9
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 8.2e-55 218.0 248 61.7
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.1e-54 217.6 253 62.1
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.1e-54 217.6 275 60.0
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-54 217.2 245 63.7
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.4e-54 217.2 252 63.1
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.8e-54 216.9 248 62.1
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.4e-54 216.5 259 64.1
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 5.3e-54 215.3 257 49.8
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 7.0e-54 214.9 246 52.4
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.0e-54 214.9 255 54.9
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 9.1e-54 214.5 221 66.1
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.2e-53 214.2 248 52.0
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.2e-53 214.2 257 63.8
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.6e-53 213.8 246 61.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 5.9e-53 211.8 244 63.1
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 5.9e-53 211.8 247 52.6
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 7.7e-53 211.5 251 61.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 7.7e-53 211.5 255 51.0
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 7.7e-53 211.5 256 60.9
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 7.7e-53 211.5 255 52.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.0e-52 211.1 252 60.7
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.0e-52 211.1 259 51.0
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.3e-52 210.7 220 64.1
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 2.9e-52 209.5 259 59.1
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 5.0e-52 208.8 257 59.1
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 5.0e-52 208.8 257 59.1
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 8.5e-52 208.0 207 68.6
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 8.5e-52 208.0 251 57.8
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.1e-51 207.6 257 58.0
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 1.1e-51 207.6 257 59.1
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.9e-51 206.8 248 60.5
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.9e-51 206.8 258 49.6
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 2.5e-51 206.5 257 59.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.1e-50 203.4 262 49.6
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.7e-50 203.0 260 56.5
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 3.6e-50 202.6 260 50.0
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.7e-50 202.2 227 63.4
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.3e-49 199.9 262 58.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 2.3e-49 199.9 267 49.1
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 4.0e-49 199.1 211 65.4
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.8e-49 198.4 213 65.3
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 8.8e-49 198.0 230 61.3
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-48 197.6 247 49.8
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.5e-48 197.2 255 58.8
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.0e-48 196.8 253 58.5
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 5.7e-48 195.3 256 57.8
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.5e-48 194.9 262 57.6
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-47 193.4 260 57.3
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 2.2e-47 193.4 129 79.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 8.3e-47 191.4 241 48.5
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 9.1e-46 188.0 262 55.3
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-45 187.6 247 48.2
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.7e-45 186.4 262 53.8
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 4.5e-45 185.7 251 47.0
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.0e-44 184.5 251 58.2
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.5e-43 180.6 263 52.9
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 3.2e-43 179.5 256 57.0
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.5e-43 178.7 265 54.3
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 8.0e-42 174.9 140 69.3
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 4.0e-41 172.6 141 63.8
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.2e-40 171.0 242 50.4
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 3.4e-40 169.5 216 48.1
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.4e-40 169.5 207 50.7
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 5.7e-40 168.7 143 64.3
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 7.5e-40 168.3 240 48.8
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 2.8e-39 166.4 248 44.4
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.8e-39 166.4 248 44.4
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.8e-39 165.6 213 50.7
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.8e-38 163.7 217 59.9
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.4e-38 163.3 189 59.8
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.5e-35 153.3 240 47.9
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.2e-34 151.0 190 57.9
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 4.4e-32 142.5 118 60.2
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.5e-27 126.7 136 52.2
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 8.9e-25 118.2 98 67.3
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.2e-24 117.9 84 73.8
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 2.7e-21 106.7 250 31.2
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.6e-20 101.7 82 68.3
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 4.3e-19 99.4 204 29.4
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.5e-19 98.2 230 30.9
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 6.8e-17 92.0 216 28.7
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.3e-15 87.8 181 28.7
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 2.4e-14 83.6 81 56.8
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.5e-11 74.3 83 53.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 3.3e-11 73.2 203 26.6
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 6.2e-10 68.9 55 63.6
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.5e-08 64.3 80 46.2
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.3e-07 61.2 256 25.0
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.7e-07 60.8 229 25.3
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 2.2e-07 60.5 59 55.9
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.4e-06 55.8 240 24.6


User provided reference genes

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