Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.4e-221 772.7 403 100.0
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.2e-190 669.1 404 85.9
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.3e-189 664.5 406 85.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 6.9e-189 664.1 404 86.4
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.0e-183 646.0 406 83.5
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 2.4e-181 639.0 403 81.9
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.0e-181 637.5 403 80.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.2e-180 636.7 403 80.1
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.2e-180 636.7 403 80.1
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.2e-180 636.7 409 82.4
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-180 636.0 409 82.4
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.7e-179 632.9 404 80.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.2e-179 632.5 404 80.9
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.9e-179 632.1 403 79.4
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.8e-179 631.7 406 83.0
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.5e-179 630.6 398 81.9
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 8.5e-179 630.6 418 78.2
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 9.4e-178 627.1 403 80.4
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.2e-177 626.7 404 82.4
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.3e-176 622.5 405 79.8
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 5.2e-176 621.3 403 80.4
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.5e-175 619.8 405 79.5
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.5e-175 619.8 405 79.5
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 3.3e-175 618.6 398 79.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.4e-175 618.2 399 81.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.4e-173 613.2 404 78.5
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.4e-173 613.2 400 80.0
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.4e-173 612.5 404 79.0
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 7.0e-173 610.9 405 77.5
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.0e-173 610.9 404 78.7
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 7.0e-173 610.9 404 78.0
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.7e-172 609.0 405 77.5
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.2e-171 605.9 402 78.6
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 2.2e-171 605.9 406 77.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 3.8e-171 605.1 403 76.7
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.9e-170 602.8 406 76.6
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.5e-170 602.4 407 77.4
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 3.2e-170 602.1 403 77.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.1e-169 599.4 409 76.0
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.6e-169 598.6 405 76.5
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.6e-169 598.6 409 76.0
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 6.1e-169 597.8 409 75.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.1e-169 597.8 409 76.3
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 6.1e-169 597.8 407 77.4
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 6.1e-169 597.8 407 77.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.4e-168 596.7 403 75.4
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-168 596.7 405 76.3
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.4e-168 596.7 406 75.9
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.8e-168 596.3 406 76.6
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.0e-168 595.5 409 75.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.2e-167 593.6 404 76.7
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.4e-167 592.0 400 77.2
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.7e-167 591.3 402 76.4
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.8e-167 590.5 409 75.3
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 4.8e-166 588.2 399 75.2
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 2.4e-165 585.9 400 76.2
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 3.1e-165 585.5 407 76.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 3.1e-165 585.5 400 76.8
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-164 583.6 403 74.2
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.0e-164 582.8 398 76.1
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 4.5e-164 581.6 408 74.3
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 7.7e-164 580.9 405 74.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.2e-163 579.3 404 75.0
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.9e-163 578.9 403 74.9
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.5e-162 575.9 450 67.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 9.5e-162 573.9 406 74.4
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.6e-161 573.2 401 75.1
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.6e-161 573.2 399 73.7
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.6e-161 572.0 402 74.4
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 3.6e-161 572.0 405 76.0
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 6.1e-161 571.2 437 69.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 8.0e-161 570.9 453 69.1
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.0e-160 570.5 402 73.6
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.0e-160 570.5 404 74.0
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 3.0e-160 568.9 389 75.3
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 4.0e-160 568.5 402 74.1
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 6.8e-160 567.8 410 73.2
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.8e-160 567.4 429 68.5
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.0e-159 566.2 404 74.0
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.0e-159 566.2 443 70.9
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.6e-159 565.8 401 73.8
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 4.4e-159 565.1 401 74.1
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-158 563.5 403 73.4
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.3e-158 563.5 403 73.4
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 6.3e-158 561.2 400 74.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 72.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 70.7
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.7e-156 555.8 411 71.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 5.9e-156 554.7 406 72.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 7.7e-156 554.3 403 71.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 7.7e-156 554.3 402 72.1
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.9e-155 552.4 407 72.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.6e-155 551.2 406 70.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.5e-154 549.3 407 72.0
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 4.3e-154 548.5 403 73.0
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 5.6e-154 548.1 406 71.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 5.6e-154 548.1 407 72.0
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 7.3e-154 547.7 400 71.0
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 9.5e-154 547.4 407 73.7
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.1e-153 546.2 403 69.2
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 4.7e-153 545.0 406 71.2
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.3e-152 542.7 401 71.3
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.0e-152 542.0 396 69.2
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.6e-151 539.3 407 70.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.3e-150 537.0 402 70.1
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.2e-150 536.2 403 69.2
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.9e-150 535.8 406 68.5
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.2e-149 532.3 409 70.2
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.2e-149 530.8 403 71.0
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-148 530.0 415 69.4
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.3e-147 526.9 407 68.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.7e-147 526.6 403 70.2
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 5.0e-147 525.0 396 66.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.3e-144 516.2 403 69.0
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 5.8e-143 511.5 412 68.2
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.8e-137 492.7 403 63.8
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.8e-137 492.7 399 63.7
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-136 490.7 374 68.2
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-128 464.2 293 81.9
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.2e-125 452.6 521 52.6
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 6.0e-124 448.4 332 72.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.2e-121 438.3 442 59.3
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.2e-121 438.3 374 62.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 8.1e-121 438.0 362 65.2
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.7e-115 420.2 435 56.3
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 4.0e-112 409.1 403 54.3
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 3.2e-109 399.4 404 57.9
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.4e-104 383.3 405 51.1
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.4e-104 383.3 405 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 5.5e-101 372.1 397 52.6
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.3e-97 360.9 400 57.2
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 4.0e-96 355.9 203 91.6
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.8e-88 330.5 406 46.1
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 9.1e-80 301.6 403 48.4
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.4e-74 282.7 358 48.6
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 6.1e-68 262.3 427 40.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.4e-64 250.4 299 49.5
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.3e-59 233.8 277 53.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.5e-54 215.7 149 76.5
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.4e-42 176.4 145 67.6
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 5.0e-30 136.3 100 71.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.2e-28 131.7 93 74.2
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-25 121.7 73 83.6
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 419 29.6
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.9e-24 117.9 105 56.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-23 115.2 187 43.9
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.2e-23 115.2 128 51.6
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.7e-22 111.3 82 73.2
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 6.2e-20 102.8 69 75.4
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.7e-17 94.7 68 66.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-17 93.6 60 73.3
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.1e-16 92.0 435 24.8
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.3e-13 80.5 384 25.0
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 9.5e-13 79.0 62 72.6
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.6e-10 70.9 55 69.1
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.4e-10 70.5 450 22.9
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 4.6e-07 60.1 86 44.2
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.3e-06 57.8 34 76.5
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.6e-06 56.2 43 72.1


User provided reference genes

Program Settings