Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 0.0e+00 1470.7 706 100.0
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1239.2 660 88.2
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1238.8 661 88.2
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1225.7 660 87.3
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1214.9 660 86.5
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1210.7 661 85.6
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1190.3 666 84.1
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 0.0e+00 1189.9 659 84.5
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1187.2 631 88.3
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 0.0e+00 1182.5 657 84.9
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1177.9 656 84.0
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1177.2 657 84.0
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1171.4 661 83.2
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1168.3 658 83.6
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1167.1 661 82.8
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1166.8 662 82.6
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1166.0 659 81.5
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1166.0 661 83.2
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1164.4 660 82.1
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1164.1 662 82.2
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1161.7 664 83.3
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1157.1 661 81.7
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1149.8 661 82.6
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1149.4 662 82.0
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1149.0 661 80.6
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1149.0 661 80.6
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1148.7 661 80.8
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1147.5 661 81.7
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1139.4 661 81.1
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1136.3 661 80.2
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1135.9 660 79.8
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1135.6 661 79.9
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1134.8 661 79.9
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1134.0 661 81.7
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1130.9 660 79.1
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1130.5 661 80.5
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 0.0e+00 1128.2 661 79.3
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1127.9 661 79.0
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1125.9 661 80.2
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1124.4 661 79.6
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1122.8 661 79.3
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1121.3 658 79.0
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1121.3 658 79.0
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 0.0e+00 1120.5 660 78.6
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 0.0e+00 1117.8 660 78.2
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 0.0e+00 1116.3 653 80.4
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 0.0e+00 1114.4 660 78.2
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 0.0e+00 1111.7 661 77.9
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 0.0e+00 1110.1 661 78.5
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1109.4 661 79.4
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1106.3 661 77.5
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1104.7 701 75.0
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 0.0e+00 1100.9 659 76.5
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1098.2 661 79.1
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 0.0e+00 1095.5 642 80.2
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 0.0e+00 1094.3 657 76.4
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1093.6 660 77.4
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 0.0e+00 1085.9 655 77.9
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1083.9 661 77.9
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 0.0e+00 1081.6 659 77.4
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1079.7 662 76.7
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 0.0e+00 1079.3 655 75.9
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1077.4 661 76.9
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1077.4 661 76.9
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 0.0e+00 1075.1 678 75.5
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1075.1 654 76.9
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 4.8e-312 1074.3 648 79.2
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 4.8e-312 1073.9 661 77.3
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 5.8e-311 1070.5 679 74.5
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 1.6e-310 1068.9 686 73.2
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 2.8e-310 1068.1 674 75.4
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 6.2e-310 1067.0 662 75.8
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 6.2e-310 1067.0 661 76.2
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 5.8e-308 1060.4 661 75.6
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 1.3e-307 1059.3 662 74.3
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 1.7e-307 1058.9 662 76.1
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 2.2e-307 1058.5 658 74.6
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 6.4e-307 1057.0 661 73.8
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 1.9e-306 1055.4 662 75.1
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 4.6e-305 1050.8 661 74.1
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 1.3e-304 1049.3 662 75.1
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 9.6e-303 1043.1 661 77.0
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 3.1e-301 1038.1 661 72.6
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 2.7e-297 1025.0 701 70.2
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 6.0e-297 1023.8 665 72.2
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 2.3e-296 1021.9 663 72.4
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 2.5e-295 1018.5 662 72.1
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 1.1e-293 1013.1 595 78.8
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 1.4e-290 1002.7 655 72.5
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 2.5e-287 991.9 661 71.7
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 2.5e-287 991.9 662 70.4
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 8.2e-286 986.9 667 71.8
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 1.4e-285 986.1 666 69.1
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 7.7e-284 980.3 664 69.9
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.5e-282 975.3 660 68.9
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 9.4e-282 973.4 667 70.6
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 1.2e-281 973.0 667 70.6
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 4.7e-281 971.1 560 80.4
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 1.0e-280 969.9 667 70.6
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 5.1e-280 967.6 666 69.5
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 5.1e-280 967.6 666 69.5
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 5.1e-280 967.6 561 78.4
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 8.8e-280 966.8 666 70.4
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.1e-279 966.5 593 76.4
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 2.6e-279 965.3 666 69.5
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 7.4e-279 963.8 666 69.4
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 1.7e-278 962.6 666 69.5
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 1.8e-277 959.1 666 68.5
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 3.8e-275 951.4 666 68.8
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.8e-272 942.6 546 81.3
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.1e-271 939.9 593 75.0
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 2.8e-270 935.3 662 64.8
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 4.8e-270 934.5 665 66.6
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.0e-267 926.8 664 69.4
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 4.0e-256 888.3 516 80.2
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 2.0e-255 885.9 561 71.3
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.7e-251 872.8 661 62.3
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 2.9e-251 872.1 662 62.4
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 2.2e-246 855.9 513 78.4
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.9e-242 842.8 527 72.3
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 1.5e-231 806.6 536 67.4
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 4.7e-217 758.4 553 66.0
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 7.1e-213 744.6 518 69.5
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 5.6e-202 708.4 566 56.9
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.4e-200 703.0 549 61.6
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 6.1e-180 635.2 710 46.9
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 7.7e-135 485.3 701 40.2
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 4.1e-128 463.0 383 58.7
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 3.5e-79 300.4 249 62.7
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 2.6e-58 231.1 182 62.6
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 2.9e-57 227.6 151 72.2
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 1.9e-40 171.8 596 25.7
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 4.0e-38 164.1 597 23.8
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 3.6e-31 141.0 224 45.1
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 4.4e-29 134.0 212 40.1
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.7e-20 105.5 57 87.7
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 6.3e-20 103.6 57 86.0
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 7.7e-18 96.7 130 46.9
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 3.8e-17 94.4 65 75.4
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.9e-16 92.0 46 89.1
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.9e-16 92.0 46 89.1
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.0e-14 86.3 69 58.0
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 5.7e-13 80.5 119 47.1
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 9.2e-11 73.2 41 78.0
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 3.5e-10 71.2 219 26.0
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.7e-09 68.9 34 88.2
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 5.6e-08 63.9 45 73.3
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 7.3e-08 63.5 186 30.1
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 9.5e-08 63.2 204 28.4
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 1.2e-07 62.8 243 22.2
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 1.6e-07 62.4 170 28.2
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 2.1e-07 62.0 265 27.2
unitig_748.g8538 Utricularia gibba HOM05D005085 ORTHO05D006135 2.1e-07 62.0 37 70.3
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 2.8e-07 61.6 278 24.5
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 8.0e-07 60.1 278 22.7
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 8.0e-07 60.1 230 28.3
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 8.0e-07 60.1 185 26.5
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 1.0e-06 59.7 276 24.3
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 1.0e-06 59.7 234 25.6
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 1.0e-06 59.7 227 25.1
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 1.4e-06 59.3 234 26.5
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 1.4e-06 59.3 234 27.8
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 1.8e-06 58.9 234 26.5
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 1.8e-06 58.9 234 26.5
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 1.8e-06 58.9 191 26.7
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 1.8e-06 58.9 43 65.1
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 2.3e-06 58.5 268 25.4
MELO3C016731.2 Cucumis melo HOM05D003475 ORTHO05D004155 3.1e-06 58.2 240 23.3
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 3.1e-06 58.2 229 24.0
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 4.0e-06 57.8 227 24.7
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 4.0e-06 57.8 265 24.2
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 4.0e-06 57.8 203 24.6
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 5.2e-06 57.4 240 22.9
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 5.2e-06 57.4 234 26.5
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 5.2e-06 57.4 229 26.6
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 6.8e-06 57.0 222 24.8
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 6.8e-06 57.0 118 30.5
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 6.8e-06 57.0 222 24.8
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 8.9e-06 56.6 194 26.3
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 8.9e-06 56.6 230 27.0
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 8.9e-06 56.6 239 23.8
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 8.9e-06 56.6 234 26.5
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 8.9e-06 56.6 203 25.6
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 8.9e-06 56.6 212 28.8


User provided reference genes

Program Settings