Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 9.6e-89 330.1 163 100.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 6.9e-79 297.4 159 91.8
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 9.0e-79 297.0 159 92.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 4.9e-77 291.2 159 88.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 5.5e-76 287.7 162 88.3
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.1e-76 287.3 159 86.8
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.7e-75 285.4 159 86.8
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.7e-75 285.4 157 87.9
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.7e-75 285.4 162 87.7
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.8e-74 282.7 154 89.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 3.0e-74 282.0 159 86.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 3.0e-74 282.0 155 86.5
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 5.1e-74 281.2 162 85.8
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.1e-74 281.2 150 89.3
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 5.1e-74 281.2 151 88.1
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.1e-74 281.2 155 87.1
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.1e-74 281.2 157 85.4
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 6.7e-74 280.8 150 90.0
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 8.7e-74 280.4 159 86.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-73 280.0 159 84.9
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.9e-73 279.3 150 88.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 2.5e-73 278.9 159 84.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.3e-73 278.5 151 88.1
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.3e-73 278.5 159 86.2
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.3e-73 278.5 159 83.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 4.3e-73 278.1 159 88.1
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 5.7e-73 277.7 158 86.7
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 5.7e-73 277.7 158 86.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 5.7e-73 277.7 151 87.4
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.7e-73 277.7 151 87.4
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 5.7e-73 277.7 161 85.1
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 9.7e-73 276.9 151 87.4
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 9.7e-73 276.9 159 83.6
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.3e-72 276.6 156 83.3
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.6e-72 276.2 159 84.3
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-72 276.2 151 86.1
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.6e-72 276.2 151 86.8
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.2e-72 275.8 159 83.0
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.2e-72 275.8 159 83.6
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.8e-72 275.4 151 86.1
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-72 275.4 151 86.1
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-72 275.4 151 86.1
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.8e-72 275.4 151 86.1
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.7e-72 275.0 151 86.8
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-72 275.0 151 85.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-72 275.0 151 85.4
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.7e-72 275.0 157 88.5
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 4.8e-72 274.6 161 83.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 6.3e-72 274.2 159 82.4
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 6.3e-72 274.2 164 81.1
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 6.3e-72 274.2 162 84.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 6.3e-72 274.2 153 85.6
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 8.2e-72 273.9 161 83.2
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 85.4
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 85.4
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 86.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 86.8
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.4e-71 273.1 151 86.1
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.4e-71 273.1 161 82.6
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-71 273.1 159 81.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.8e-71 272.7 164 79.3
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.1e-71 271.9 151 84.8
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 4.1e-71 271.6 151 86.1
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 4.1e-71 271.6 155 85.8
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.1e-71 271.6 160 83.1
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.1e-71 271.6 150 86.0
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.9e-71 270.8 161 82.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 9.0e-71 270.4 151 86.1
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.5e-70 269.6 151 84.1
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 2.0e-70 269.2 146 89.0
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.0e-70 269.2 151 84.8
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.0e-70 269.2 159 83.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.6e-70 268.9 151 84.1
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.6e-70 268.9 149 82.6
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.6e-70 268.9 149 82.6
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 2.6e-70 268.9 159 83.0
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.6e-70 268.9 159 83.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.6e-70 268.9 164 80.5
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 3.4e-70 268.5 151 83.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.4e-70 268.5 157 82.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.5e-70 268.1 149 84.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.5e-70 268.1 151 83.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 4.5e-70 268.1 159 83.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 4.5e-70 268.1 162 81.5
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 5.9e-70 267.7 151 83.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 7.7e-70 267.3 151 83.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 7.7e-70 267.3 150 84.7
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.0e-69 266.9 149 83.9
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-69 266.9 151 82.1
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.0e-69 266.9 151 85.4
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-69 266.5 149 83.9
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-69 266.5 151 82.8
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-69 266.5 149 83.9
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-69 266.5 151 82.8
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.3e-69 266.5 159 82.4
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.7e-69 266.2 151 82.8
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.7e-69 266.2 162 80.9
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.2e-69 265.8 151 82.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.2e-69 265.8 151 84.8
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.2e-69 265.8 162 81.5
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.9e-69 265.4 148 85.1
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.9e-69 265.4 148 85.1
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 3.8e-69 265.0 151 82.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 3.8e-69 265.0 153 83.7
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.8e-69 265.0 215 65.1
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 5.0e-69 264.6 151 82.1
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.0e-69 264.6 151 82.8
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 6.5e-69 264.2 151 84.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.1e-68 263.5 151 84.8
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-68 263.1 151 82.1
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-68 263.1 151 82.1
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.4e-68 263.1 153 83.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.9e-68 262.7 154 82.5
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.5e-68 262.3 151 81.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-68 262.3 160 81.2
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 4.2e-68 261.5 151 81.5
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.6e-67 259.6 150 82.0
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-67 259.2 151 80.8
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.6e-67 258.1 151 82.8
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 7.9e-67 257.3 161 77.6
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 8.8e-66 253.8 160 77.5
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.1e-65 253.4 155 77.4
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.5e-65 252.3 151 79.5
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 5.7e-65 251.1 155 76.1
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.7e-64 249.6 151 78.8
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.7e-64 249.6 151 78.8
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.2e-64 249.2 155 77.4
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 3.7e-64 248.4 151 78.1
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 3.7e-64 248.4 151 78.1
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.1e-63 246.9 155 75.5
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 9.1e-63 243.8 149 78.5
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.0e-62 242.7 149 77.9
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.4e-62 241.9 152 77.0
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.2e-61 239.2 152 75.0
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.8e-61 238.4 147 76.2
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.4e-60 236.5 159 73.0
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.4e-60 236.5 159 73.0
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.6e-59 231.9 151 75.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 9.7e-57 223.8 128 82.0
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.0e-53 213.8 110 89.1
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.2e-53 212.6 111 89.2
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 5.5e-52 208.0 142 67.6
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 3.6e-51 205.3 151 66.2
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.3e-48 196.8 132 72.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.6e-46 189.1 154 63.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-44 183.7 111 76.6
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 3.2e-44 182.2 134 64.9
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-43 180.3 173 57.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 3.6e-43 178.7 134 63.4
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.6e-43 178.7 133 62.4
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 2.3e-42 176.0 108 85.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 4.4e-41 171.8 134 60.4
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 2.3e-34 149.4 112 69.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.8e-34 147.5 151 56.3
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 4.4e-33 145.2 86 84.9
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.8e-32 142.5 88 81.8
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 6.3e-32 141.4 120 55.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 6.6e-29 131.3 105 69.5
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.2e-28 128.6 103 61.2
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.6e-27 126.7 101 65.3
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.4e-25 118.6 172 39.5
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.4e-25 118.6 126 44.4
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 3.7e-24 115.5 71 78.9
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.6e-22 110.2 117 44.4
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.6e-22 110.2 117 44.4
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 7.8e-22 107.8 57 84.2
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.3e-21 106.3 151 43.7
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.8e-19 99.4 54 77.8
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 8.0e-19 97.8 49 79.6
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.7e-16 90.1 55 70.9
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.9e-16 88.6 55 78.2
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 6.4e-16 88.2 100 43.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 6.4e-16 88.2 100 43.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.6e-14 83.6 95 41.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.6e-12 75.1 47 63.8
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 6.8e-10 68.2 95 42.1


User provided reference genes

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