Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.6e-118 428.7 213 100.0
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 8.8e-42 174.5 177 56.5
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.8e-34 147.9 195 46.7
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 4.4e-33 145.6 178 50.0
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.7e-32 142.5 167 46.7
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 6.6e-29 131.7 175 49.7
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 6.8e-26 121.7 154 44.8
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.2e-25 120.9 147 45.6
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.4e-23 112.1 172 39.5
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 7.8e-22 108.2 144 47.2
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.3e-21 107.5 149 45.6
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 3.9e-21 105.9 183 42.1
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 1.5e-20 104.0 150 38.0
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 5.6e-20 102.1 156 41.0
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.6e-19 100.5 173 35.8
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.1e-19 100.1 186 39.2
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.4e-18 97.4 159 40.9
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 3.1e-18 96.3 182 35.2
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 4.0e-18 95.9 148 36.5
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 6.8e-18 95.1 138 43.5
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.8e-18 95.1 169 37.9
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 8.9e-18 94.7 176 36.9
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-17 94.4 139 39.6
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.2e-17 94.4 162 37.7
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 2.0e-17 93.6 177 37.9
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 2.6e-17 93.2 154 38.3
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.4e-17 92.8 149 36.9
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 4.4e-17 92.4 157 34.4
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 5.8e-17 92.0 148 35.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 5.8e-17 92.0 149 38.3
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 7.5e-17 91.7 148 39.9
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.5e-17 91.7 149 36.9
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.2e-16 90.1 158 38.0
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.2e-16 90.1 176 30.1
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.1e-15 87.8 158 39.9
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.1e-15 87.8 145 39.3
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-15 87.8 174 32.2
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-15 87.0 174 32.2
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.9e-15 87.0 134 41.8
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 7.0e-15 85.1 153 34.6
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.0e-15 85.1 174 31.6
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 1.2e-14 84.3 148 36.5
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 2.0e-14 83.6 138 39.9
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 2.7e-14 83.2 174 31.6
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.5e-14 82.8 174 31.6
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.5e-14 82.8 145 42.1
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 3.5e-14 82.8 149 31.5
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.5e-14 82.8 149 31.5
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.6e-14 82.4 186 34.4
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.6e-14 82.4 161 32.3
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 4.6e-14 82.4 146 35.6
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 7.8e-14 81.6 148 29.7
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 7.8e-14 81.6 148 35.1
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.3e-13 80.9 148 36.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.3e-13 80.1 148 33.8
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.3e-13 80.1 148 34.5
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.3e-13 80.1 136 39.7
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 5.0e-13 79.0 141 34.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-13 79.0 112 36.6
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 6.6e-13 78.6 137 38.0
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 6.6e-13 78.6 176 31.8
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 6.6e-13 78.6 145 32.4
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 8.6e-13 78.2 152 35.5
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 8.6e-13 78.2 171 34.5
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.5e-12 77.4 177 31.6
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.5e-12 77.4 191 33.0
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-12 77.4 103 37.9
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-12 77.4 145 40.0
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.9e-12 77.0 147 34.7
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 2.5e-12 76.6 79 45.6
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-12 76.6 102 38.2
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-12 76.6 102 38.2
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 3.3e-12 76.3 150 34.7
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 3.3e-12 76.3 153 33.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.3e-12 76.3 149 33.6
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 3.3e-12 76.3 150 30.0
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 4.3e-12 75.9 154 33.1
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 5.6e-12 75.5 176 30.7
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.6e-12 75.5 150 32.0
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 7.3e-12 75.1 176 29.5
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 7.3e-12 75.1 154 33.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 9.5e-12 74.7 174 29.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.2e-11 74.3 144 34.7
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 2.1e-11 73.6 177 33.3
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 2.1e-11 73.6 175 33.1
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.8e-11 73.2 152 31.6
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.8e-11 73.2 186 29.0
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.8e-11 73.2 148 31.1
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 4.7e-11 72.4 178 29.2
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 6.2e-11 72.0 179 32.4
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 6.2e-11 72.0 165 28.5
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.4e-10 70.9 152 31.6
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.4e-10 70.9 105 39.0
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.8e-10 70.5 145 39.3
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.8e-10 70.5 147 29.9
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.3e-10 70.1 136 33.1
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.3e-10 70.1 68 45.6
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 5.2e-10 68.9 115 36.5
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 5.2e-10 68.9 186 29.6
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 6.8e-10 68.6 109 35.8
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 6.8e-10 68.6 134 32.8
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.2e-09 67.8 147 29.9
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 2.0e-09 67.0 171 32.7
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.6e-09 66.6 163 30.7
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 2.6e-09 66.6 69 40.6
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.6e-09 66.6 134 32.1
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 4.4e-09 65.9 134 31.3
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 5.8e-09 65.5 141 32.6
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 5.8e-09 65.5 87 37.9
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 9.8e-09 64.7 61 45.9
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.3e-08 64.3 73 43.8
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.3e-08 64.3 73 43.8
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.2e-08 63.5 157 28.0
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 3.7e-08 62.8 73 42.5
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 6.4e-08 62.0 85 36.5
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 6.4e-08 62.0 148 26.4
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 8.3e-08 61.6 78 42.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 8.3e-08 61.6 93 36.6
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.1e-07 59.3 128 32.0
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 7.1e-07 58.5 149 32.2
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 9.2e-07 58.2 60 45.0
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-06 57.8 116 36.2
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.6e-06 57.4 88 34.1
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 4.6e-06 55.8 84 33.3


User provided reference genes

Program Settings