Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 3912.1 1962 100.0
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2935.6 2040 74.1
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2894.4 1969 73.7
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2876.7 1961 73.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2808.1 1967 73.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2773.4 1968 71.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2766.9 2159 67.0
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2719.5 1964 69.8
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2697.9 1969 69.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2677.9 2126 66.4
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2655.2 1993 68.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2653.6 1979 68.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2645.2 1962 67.4
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2638.2 1926 70.9
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2608.6 1963 67.4
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2580.4 1970 66.6
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2558.5 1968 65.5
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2556.9 1959 66.8
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2548.9 1857 68.3
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2548.5 1959 66.3
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2536.5 1965 64.9
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2531.9 1982 64.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2527.3 1963 64.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2522.3 1960 64.9
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2506.1 1964 64.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2503.4 1960 64.5
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2493.8 1971 65.2
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2493.4 1967 64.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2493.0 1944 65.0
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2492.2 1964 64.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2484.9 1955 64.3
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2482.2 1964 64.1
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2475.7 1973 63.6
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2472.2 1968 63.9
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2469.9 1968 63.7
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2469.1 1965 63.7
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2461.8 1968 63.3
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2461.8 1956 63.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2460.3 1957 63.6
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2443.7 2172 59.1
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2440.2 1966 62.6
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2432.1 1939 63.2
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2422.9 1950 64.1
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2421.0 1972 62.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2416.3 1959 62.6
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2400.9 1964 63.3
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2400.5 1966 63.4
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2393.2 1959 62.2
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2387.5 1993 62.2
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2360.9 1961 61.6
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2347.0 2265 55.0
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2346.6 1957 61.7
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2346.2 1847 64.1
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2344.3 1960 60.8
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2340.5 1811 65.1
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2308.5 1966 60.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2271.1 1972 59.1
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2267.3 1970 58.7
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2258.8 1950 58.6
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2253.4 1950 58.5
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2247.6 1976 59.5
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2247.2 1969 57.9
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2245.7 1975 57.6
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2244.2 1963 57.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2243.8 1965 57.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2241.8 1959 58.1
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2231.4 1990 57.1
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2223.4 1966 57.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2223.0 1991 57.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2218.0 1965 58.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2214.1 1608 69.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2199.1 1951 59.6
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2175.2 2008 55.7
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2126.3 2005 56.3
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2077.4 1953 56.1
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2040.8 1828 56.9
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 2019.6 1978 54.0
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1755.3 1278 69.2
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1704.1 1187 71.4
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1559.7 1267 63.0
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1508.0 1834 44.8
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1380.9 1432 51.0
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1337.8 1076 63.8
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1323.1 2071 39.2
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1300.4 2019 38.9
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1284.2 1002 65.0
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1229.5 2024 36.9
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1204.5 1163 55.5
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.8e-306 1057.0 2145 33.9
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.7e-291 1005.7 783 64.8
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 7.6e-289 998.4 889 58.3
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 9.6e-276 954.9 781 62.9
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.4e-271 939.1 955 53.3
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 8.7e-269 931.8 1126 46.7
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.5e-256 889.0 1010 48.7
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.5e-252 877.1 969 50.1
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 9.1e-218 762.3 527 72.1
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 2.2e-203 714.5 658 58.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.3e-176 625.5 508 63.0
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 9.6e-175 619.4 542 57.4
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.6e-169 602.1 522 61.1
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.8e-156 557.0 455 61.3
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.8e-147 527.7 435 60.5
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.5e-146 523.9 654 45.9
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.1e-143 516.2 393 64.9
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.1e-137 495.4 855 36.1
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.6e-129 469.2 292 77.4
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.2e-116 426.4 337 64.4
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.5e-106 392.1 390 53.3
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.6e-97 362.8 216 82.4
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.4e-93 349.0 253 63.6
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 8.6e-91 340.5 341 54.5
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.9e-86 325.5 374 50.5
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.4e-80 306.6 231 65.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.2e-73 283.5 232 62.5
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 8.9e-72 277.3 195 68.2
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 2.2e-70 272.7 195 66.2
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.5e-66 260.0 318 43.7
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 3.6e-57 228.8 284 48.2
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.7e-51 209.9 525 29.7
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 7.3e-50 204.5 302 40.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.4e-48 199.5 168 57.1
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.8e-41 176.0 289 39.8
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.3e-37 161.0 141 61.0
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.6e-33 150.2 141 53.2
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-33 149.8 291 35.4
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.8e-32 146.7 224 39.7
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 4.9e-30 138.7 94 70.2
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.2e-28 134.0 132 52.3
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.2e-28 134.0 156 48.7
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.6e-28 132.1 93 68.8
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.3e-27 129.8 128 53.1
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 3.3e-26 125.9 99 65.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.3e-25 124.0 194 39.7
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 3.1e-24 119.4 290 31.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.3e-24 118.6 162 46.9
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.9e-21 110.2 111 48.6
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 2.3e-19 103.2 145 46.2
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.0e-19 102.8 100 57.0
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 5.7e-18 98.6 99 49.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.8e-16 93.6 79 58.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.5e-15 89.0 74 58.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.5e-15 89.0 74 58.1
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.0e-14 87.8 121 38.8
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.0e-14 87.8 74 56.8
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.0e-14 87.8 204 30.4
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 2.9e-14 86.3 111 48.6
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 5.0e-14 85.5 119 38.7
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 3.2e-13 82.8 135 38.5
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 4.2e-13 82.4 60 66.7
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 7.2e-13 81.6 88 46.6
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.6e-12 80.5 93 45.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.8e-11 77.0 117 40.2
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.8e-11 77.0 117 40.2
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 2.0e-10 73.6 46 76.1
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 5.7e-10 72.0 52 61.5
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 8.2e-09 68.2 58 53.4
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.8e-08 67.0 74 44.6
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 2.4e-08 66.6 58 51.7
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 6.9e-08 65.1 57 57.9


User provided reference genes

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