Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35040 Davidia involucrata HOM05D006711 ORTHO05D008104 9.9e-33 142.9 74 100.0
Dinv33512 Davidia involucrata HOM05D006711 ORTHO05D008104 9.6e-12 73.2 72 62.5
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 3.1e-10 68.2 39 89.7
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 3.1e-10 68.2 39 89.7
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 4.0e-10 67.8 39 89.7
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 5.3e-10 67.4 44 79.5
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 6.9e-10 67.0 39 87.2
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 6.9e-10 67.0 39 89.7
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 6.9e-10 67.0 39 89.7
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 9.0e-10 66.6 38 92.1
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 1.2e-09 66.2 38 92.1
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 1.2e-09 66.2 38 92.1
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 1.2e-09 66.2 39 87.2
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 1.2e-09 66.2 38 92.1
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 1.2e-09 66.2 38 89.5
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 1.2e-09 66.2 39 84.6
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 1.5e-09 65.9 39 87.2
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 1.5e-09 65.9 39 87.2
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 1.5e-09 65.9 38 89.5
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 1.5e-09 65.9 38 86.8
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 1.5e-09 65.9 38 89.5
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 1.5e-09 65.9 39 87.2
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 2.0e-09 65.5 39 84.6
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 2.0e-09 65.5 38 89.5
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 2.0e-09 65.5 39 87.2
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 2.0e-09 65.5 39 87.2
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 2.6e-09 65.1 39 87.2
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 2.6e-09 65.1 35 94.3
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 2.6e-09 65.1 38 86.8
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 2.6e-09 65.1 38 86.8
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 2.6e-09 65.1 38 89.5
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 87.2
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 84.6
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 84.6
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 84.6
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 84.6
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 84.6
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 84.6
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 87.2
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 87.2
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 3.4e-09 64.7 39 87.2
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 3.4e-09 64.7 38 89.5
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 3.4e-09 64.7 38 86.8
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 4.5e-09 64.3 39 84.6
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 4.5e-09 64.3 39 84.6
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 4.5e-09 64.3 35 94.3
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 4.5e-09 64.3 38 86.8
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 4.5e-09 64.3 38 86.8
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 4.5e-09 64.3 70 57.1
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 4.5e-09 64.3 39 87.2
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 5.8e-09 63.9 39 82.1
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 5.8e-09 63.9 39 82.1
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 5.8e-09 63.9 39 84.6
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 5.8e-09 63.9 38 86.8
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 1.0e-08 63.2 39 84.6
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 1.0e-08 63.2 39 84.6
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 1.0e-08 63.2 38 86.8
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 1.0e-08 63.2 39 84.6
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 1.3e-08 62.8 39 82.1
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 1.7e-08 62.4 39 82.1
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 2.2e-08 62.0 39 82.1
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 2.2e-08 62.0 38 84.2
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 2.2e-08 62.0 38 84.2
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 2.2e-08 62.0 39 82.1
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 2.2e-08 62.0 38 84.2
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 2.9e-08 61.6 38 84.2
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 2.9e-08 61.6 39 82.1
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 2.9e-08 61.6 39 82.1
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 2.9e-08 61.6 39 82.1
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 2.9e-08 61.6 39 82.1
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 3.8e-08 61.2 38 84.2
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 3.8e-08 61.2 39 82.1
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 3.8e-08 61.2 39 82.1
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 3.8e-08 61.2 34 91.2
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 3.8e-08 61.2 38 81.6
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 3.8e-08 61.2 39 82.1
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 3.8e-08 61.2 39 79.5
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 3.8e-08 61.2 36 88.9
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 3.8e-08 61.2 39 82.1
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 3.8e-08 61.2 38 84.2
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 4.9e-08 60.8 39 82.1
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 4.9e-08 60.8 38 78.9
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 4.9e-08 60.8 38 78.9
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 4.9e-08 60.8 36 86.1
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 4.9e-08 60.8 39 79.5
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 4.9e-08 60.8 39 82.1
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 4.9e-08 60.8 39 79.5
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 4.9e-08 60.8 39 79.5
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 6.5e-08 60.5 39 82.1
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 6.5e-08 60.5 39 82.1
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 6.5e-08 60.5 39 82.1
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 6.5e-08 60.5 39 82.1
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 6.5e-08 60.5 39 82.1
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 6.5e-08 60.5 39 79.5
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 6.5e-08 60.5 39 79.5
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 8.4e-08 60.1 39 82.1
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 8.4e-08 60.1 38 81.6
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 8.4e-08 60.1 48 66.7
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 1.4e-07 59.3 39 71.8
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 1.4e-07 59.3 38 78.9
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 1.4e-07 59.3 34 88.2
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 1.9e-07 58.9 39 79.5
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 1.9e-07 58.9 38 81.6
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 1.9e-07 58.9 39 74.4
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 1.9e-07 58.9 39 74.4
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 2.5e-07 58.5 48 64.6
SHI34267 Sapria himalayana HOM05D006711 ORTHO05D008104 2.5e-07 58.5 36 83.3
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 3.2e-07 58.2 35 82.9
Rhsim10G0024700 Rhododendron simsii HOM05D006711 ORTHO05D008104 3.2e-07 58.2 35 85.7
PGSC0003DMG400003004 Solanum tuberosum HOM05D006711 ORTHO05D008104 3.2e-07 58.2 38 73.7
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 4.2e-07 57.8 39 74.4
Rhsim10G0024900 Rhododendron simsii HOM05D006711 ORTHO05D008104 5.5e-07 57.4 39 79.5
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 7.1e-07 57.0 39 71.8
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 2.7e-06 55.1 44 63.6
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 4.6e-06 54.3 40 70.0
ATR0820G148 Amborella trichopoda HOM05D006711 ORTHO05D008104 4.6e-06 54.3 40 70.0


User provided reference genes

Program Settings