Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 6.1e-68 260.8 139 100.0
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.7e-25 118.6 124 63.7
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 5.1e-22 108.2 131 55.7
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 8.9e-19 97.4 124 53.2
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.3e-17 93.6 123 52.8
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.3e-17 93.6 129 51.9
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.8e-17 92.0 130 46.2
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.1e-16 90.5 126 46.8
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 9.3e-16 87.4 125 47.2
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.2e-15 87.0 116 50.9
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.6e-15 86.7 133 51.1
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 2.5e-13 79.3 127 48.8
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.3e-13 79.0 136 45.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 3.3e-13 79.0 119 49.6
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 5.6e-13 78.2 110 50.0
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 7.3e-13 77.8 138 41.3
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.3e-12 77.0 129 48.1
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.3e-12 77.0 132 43.2
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.3e-12 77.0 119 42.9
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.3e-12 77.0 134 42.5
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.6e-12 75.5 132 42.4
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 3.6e-12 75.5 127 45.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 4.8e-12 75.1 144 41.7
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.8e-12 75.1 127 46.5
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 6.2e-12 74.7 131 45.0
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 8.1e-12 74.3 116 46.6
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 8.1e-12 74.3 133 43.6
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.1e-11 73.9 76 57.9
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.1e-11 72.4 138 46.4
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 4.0e-11 72.0 76 56.6
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 5.3e-11 71.6 128 46.1
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.3e-11 71.6 133 44.4
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 9.0e-11 70.9 131 43.5
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.0e-10 69.7 128 45.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.0e-10 69.7 122 41.8
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 5.8e-10 68.2 131 42.7
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 7.6e-10 67.8 131 44.3
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.6e-10 67.8 124 38.7
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 9.9e-10 67.4 134 39.6
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.3e-09 67.0 76 56.6
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.3e-09 67.0 66 60.6
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 1.7e-09 66.6 123 42.3
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.7e-09 66.6 129 41.1
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.2e-09 66.2 79 53.2
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.2e-09 66.2 124 38.7
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 2.2e-09 66.2 70 62.9
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 2.9e-09 65.9 86 51.2
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.8e-09 65.5 126 39.7
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 3.8e-09 65.5 126 40.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 4.9e-09 65.1 89 46.1
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 4.9e-09 65.1 78 52.6
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 8.4e-09 64.3 72 52.8
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 8.4e-09 64.3 69 53.6
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.1e-08 63.9 70 52.9
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.9e-08 63.2 136 39.0
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 2.4e-08 62.8 35 88.6
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 3.2e-08 62.4 83 50.6
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.2e-08 62.0 136 37.5
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 4.2e-08 62.0 135 40.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.4e-08 61.6 131 37.4
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 5.4e-08 61.6 133 41.4
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 7.1e-08 61.2 85 45.9
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.1e-08 61.2 85 45.9
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-07 60.5 36 77.8
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-07 60.1 36 75.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.6e-07 60.1 36 75.0
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.6e-07 60.1 85 45.9
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 2.1e-07 59.7 118 43.2
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-07 59.7 35 80.0
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 2.1e-07 59.7 36 77.8
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.7e-07 59.3 118 43.2
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.7e-07 59.3 127 37.8
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 2.7e-07 59.3 113 41.6
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.5e-07 58.9 121 38.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.5e-07 58.9 124 36.3
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.5e-07 58.9 130 36.2
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 3.5e-07 58.9 109 41.3
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 3.5e-07 58.9 55 63.6
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 6.0e-07 58.2 110 46.4
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 7.9e-07 57.8 49 63.3
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 7.9e-07 57.8 34 79.4
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 7.9e-07 57.8 34 79.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 7.9e-07 57.8 67 56.7
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.0e-06 57.4 45 64.4
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.3e-06 57.0 85 45.9
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.7e-06 56.6 128 39.1
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.7e-06 56.6 128 37.5
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.3e-06 56.2 118 37.3
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.0e-06 55.8 74 48.6
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 3.0e-06 55.8 43 67.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.0e-06 55.8 35 80.0
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 5.1e-06 55.1 34 79.4
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 5.1e-06 55.1 34 79.4
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 5.1e-06 55.1 33 75.8
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 5.1e-06 55.1 33 75.8
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 5.1e-06 55.1 33 75.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 8.7e-06 54.3 36 69.4
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 8.7e-06 54.3 35 74.3
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 8.7e-06 54.3 86 46.5


User provided reference genes

Program Settings