Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 0.0e+00 1356.3 682 100.0
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 5.3e-306 1053.9 702 76.9
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 4.2e-303 1044.3 704 77.3
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 7.9e-302 1040.0 702 74.9
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 3.5e-294 1014.6 691 76.0
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.6e-291 1005.7 702 72.6
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 6.3e-291 1003.8 702 72.6
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 1.2e-289 999.6 702 72.2
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 2.0e-289 998.8 703 72.8
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 7.6e-289 996.9 674 75.8
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 1.9e-279 965.7 702 70.7
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 2.3e-277 958.7 702 69.4
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 3.9e-277 958.0 705 71.5
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 5.7e-276 954.1 702 69.1
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 3.7e-275 951.4 702 68.8
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 8.2e-275 950.3 703 70.8
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 1.8e-274 949.1 702 69.9
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 2.4e-274 948.7 702 69.1
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 2.4e-274 948.7 703 70.3
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 3.1e-274 948.3 706 68.8
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 5.3e-274 947.6 702 69.1
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 9.1e-274 946.8 702 68.8
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 1.5e-273 946.0 702 69.4
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 2.6e-273 945.3 702 68.7
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.7e-272 942.6 697 68.0
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 8.5e-272 940.3 703 68.0
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 1.9e-271 939.1 704 68.6
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 2.5e-271 938.7 702 68.4
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 2.5e-271 938.7 702 68.4
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 5.5e-271 937.6 702 68.2
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 1.2e-270 936.4 702 67.5
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 1.2e-270 936.4 704 67.6
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 3.6e-270 934.9 703 68.6
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 3.6e-270 934.9 703 68.8
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 6.1e-270 934.1 703 67.4
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 1.0e-269 933.3 702 67.5
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 1.4e-269 932.9 702 67.7
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 1.4e-269 932.9 702 67.7
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 3.0e-269 931.8 702 68.5
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 3.9e-269 931.4 703 68.7
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 5.2e-269 931.0 702 67.9
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 1.1e-268 929.9 714 67.6
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 2.6e-268 928.7 704 68.0
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 2.2e-267 925.6 703 68.0
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.0e-265 919.1 613 77.2
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 3.5e-265 918.3 702 67.5
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 5.9e-265 917.5 702 66.1
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 1.4e-261 906.4 703 65.4
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 6.7e-261 904.0 703 65.9
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 5.7e-260 901.0 703 65.3
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 5.7e-260 901.0 667 68.7
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.7e-259 899.4 662 69.3
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 6.3e-259 897.5 702 67.1
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 8.2e-259 897.1 703 66.0
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 8.2e-259 897.1 704 65.9
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 2.0e-257 892.5 705 65.4
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 3.5e-257 891.7 656 69.2
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 7.7e-257 890.6 703 64.6
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 2.9e-256 888.6 702 65.2
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 5.0e-256 887.9 703 65.0
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 3.6e-254 881.7 702 64.8
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 3.0e-253 878.6 702 64.1
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 6.8e-253 877.5 702 64.8
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 6.8e-253 877.5 702 65.2
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 8.8e-253 877.1 672 66.5
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 1.8e-250 869.4 702 63.5
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 7.0e-250 867.5 702 63.5
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 3.5e-249 865.1 702 63.2
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 8.6e-248 860.5 702 62.8
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 7.2e-247 857.4 702 63.8
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 4.7e-246 854.7 702 62.5
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 6.1e-246 854.4 702 62.5
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 6.1e-246 854.4 702 62.5
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 3.0e-245 852.0 706 63.7
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 3.4e-244 848.6 747 60.1
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 4.4e-244 848.2 703 62.0
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.2e-241 840.1 636 68.6
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 3.5e-241 838.6 636 68.7
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 1.2e-236 823.5 698 62.0
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.2e-236 823.5 702 61.8
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 2.3e-229 799.3 702 58.8
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 2.2e-227 792.7 596 68.1
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 8.3e-227 790.8 561 69.0
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 3.9e-224 781.9 685 62.2
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 6.8e-221 771.2 704 57.8
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.1e-217 759.6 626 62.6
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.6e-201 706.8 596 62.2
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 4.6e-201 705.3 702 55.3
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 3.0e-200 702.6 612 60.9
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 2.1e-182 643.3 524 61.3
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 9.7e-175 617.8 699 47.9
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 1.5e-172 610.5 711 47.3
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 2.4e-157 560.1 532 57.9
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 2.9e-155 553.1 405 68.1
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 1.5e-151 540.8 710 43.5
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 7.0e-149 531.9 417 63.3
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.1e-138 498.0 480 57.1
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 1.8e-136 490.7 329 72.9
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.3e-136 490.3 704 41.2
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.9e-123 446.4 306 69.0
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 1.4e-117 427.9 279 72.4
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 1.5e-106 391.3 409 52.3
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 2.1e-97 360.9 205 80.5
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 3.6e-81 307.0 709 31.9
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.8e-70 270.4 331 49.5
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 5.1e-67 260.0 222 65.8
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 8.2e-57 226.1 131 76.3
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 2.0e-50 204.9 686 28.4
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 2.3e-43 181.4 108 75.0
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 4.7e-28 130.6 154 57.8
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 1.4e-24 119.0 71 77.5
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 4.4e-18 97.4 64 75.0
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 3.0e-11 74.7 71 56.3
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 4.0e-11 74.3 71 56.3
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 8.9e-11 73.2 179 27.4
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 2.0e-10 72.0 178 26.4
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 1.7e-09 68.9 58 58.6
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 2.2e-09 68.6 178 28.1
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 2.2e-09 68.6 183 27.3
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 4.1e-08 64.3 200 26.0
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 7.0e-08 63.5 179 27.4
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 7.0e-08 63.5 178 27.0
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.2e-07 62.8 178 27.5
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 2.7e-07 61.6 178 27.5
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.7e-07 61.6 178 27.5
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 3.5e-07 61.2 180 25.6
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 4.6e-07 60.8 178 27.5
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 5.9e-07 60.5 154 27.9
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 5.9e-07 60.5 201 26.9
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 7.8e-07 60.1 199 28.1
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 1.0e-06 59.7 188 27.7
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 1.0e-06 59.7 179 23.5
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.0e-06 59.7 178 27.0
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 1.0e-06 59.7 196 24.5
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 1.3e-06 59.3 150 28.0
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 1.3e-06 59.3 192 26.0
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 1.3e-06 59.3 194 25.3
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.3e-06 59.3 179 25.7
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.3e-06 59.3 179 25.1
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 1.7e-06 58.9 179 25.7
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 2.3e-06 58.5 192 26.0
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 3.0e-06 58.2 177 25.4
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 3.0e-06 58.2 179 25.7
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 3.0e-06 58.2 179 25.7
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 3.0e-06 58.2 185 22.7
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 3.0e-06 58.2 195 24.6
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 3.9e-06 57.8 197 25.4
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 3.9e-06 57.8 155 25.8
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 6.6e-06 57.0 179 26.8
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 6.6e-06 57.0 195 25.1
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 6.6e-06 57.0 187 26.2


User provided reference genes

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