Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 3.1e-187 658.3 327 100.0
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 7.4e-149 530.8 333 82.0
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 1.1e-147 526.9 319 82.8
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.8e-147 526.2 344 79.1
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 3.1e-147 525.4 329 80.9
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.1e-144 516.9 328 80.5
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.9e-144 516.2 327 80.7
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 1.4e-142 510.0 320 80.3
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 1.7e-137 493.0 329 78.4
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 6.5e-137 491.1 322 76.4
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 4.4e-133 478.4 322 76.1
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 4.8e-132 474.9 322 75.5
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.6e-130 469.9 329 74.2
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 2.7e-130 469.2 328 73.2
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 2.7e-130 469.2 263 87.5
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 4.5e-130 468.4 320 74.4
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 4.5e-130 468.4 323 74.6
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 3.8e-129 465.3 323 74.0
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 3.8e-129 465.3 323 74.0
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 5.0e-129 464.9 322 75.8
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 1.5e-128 463.4 324 75.0
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 1.9e-128 463.0 318 73.3
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 1.8e-126 456.4 318 72.6
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 4.0e-126 455.3 323 74.0
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 1.2e-125 453.8 335 71.3
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.0e-125 453.0 317 72.2
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 2.8e-124 449.1 323 71.8
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.4e-123 446.8 318 70.1
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.8e-123 446.4 317 74.1
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 5.4e-123 444.9 358 67.3
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 7.0e-123 444.5 274 78.8
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 3.5e-122 442.2 330 71.2
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 3.5e-122 442.2 334 69.5
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.0e-121 440.7 292 78.1
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 1.0e-121 440.7 314 72.0
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.0e-121 440.7 320 70.6
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.3e-121 440.3 328 71.6
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 7.3e-120 434.5 319 72.1
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 7.3e-120 434.5 328 71.0
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 9.5e-120 434.1 328 71.0
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 9.5e-120 434.1 325 70.8
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 2.1e-119 433.0 323 70.6
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 1.4e-118 430.3 313 70.9
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 3.4e-117 425.6 319 71.5
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 2.2e-116 422.9 334 69.2
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.9e-116 422.5 316 69.0
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 4.9e-116 421.8 334 68.9
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 6.4e-116 421.4 334 68.6
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.1e-115 418.7 334 68.3
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.6e-114 416.8 271 75.6
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.0e-114 416.4 329 69.9
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 3.5e-114 415.6 308 69.8
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.3e-113 413.7 321 70.4
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 5.0e-113 411.8 327 70.0
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 6.6e-113 411.4 295 70.8
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 8.6e-113 411.0 254 79.1
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 1.9e-112 409.8 345 64.9
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.9e-112 409.8 287 73.2
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 2.5e-112 409.5 307 68.4
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.2e-111 407.1 311 68.5
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 6.2e-111 404.8 314 67.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.8e-110 403.3 290 70.0
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 2.3e-110 402.9 315 68.3
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 6.8e-110 401.4 287 71.8
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 2.6e-109 399.4 315 68.3
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 3.4e-109 399.1 257 77.0
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 5.8e-109 398.3 330 64.2
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 7.5e-109 397.9 325 68.3
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.9e-108 396.0 311 66.6
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 3.7e-108 395.6 309 66.7
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 8.3e-108 394.4 232 83.2
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 2.4e-107 392.9 322 65.5
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 2.4e-107 392.9 320 66.6
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 4.1e-107 392.1 274 74.8
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 9.2e-107 391.0 292 72.3
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 1.3e-105 387.1 312 66.7
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 2.5e-104 382.9 312 66.7
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 5.6e-104 381.7 315 64.4
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.2e-103 380.6 311 65.9
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 2.8e-103 379.4 314 65.3
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 2.3e-102 376.3 316 64.6
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 2.3e-102 376.3 316 64.6
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 3.1e-102 375.9 314 65.0
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 5.2e-102 375.2 262 70.6
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 6.8e-102 374.8 258 74.4
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 8.9e-102 374.4 283 68.2
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 7.5e-101 371.3 306 66.7
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.9e-99 366.7 229 78.6
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 4.6e-98 362.1 279 67.4
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.5e-96 357.1 221 79.6
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 8.1e-95 351.3 260 66.9
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 1.5e-93 347.1 252 66.3
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.7e-92 343.6 197 83.8
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.9e-91 340.1 237 75.5
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.5e-85 320.5 303 58.1
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 3.4e-85 319.3 176 87.5
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 7.6e-85 318.2 176 84.7
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 2.4e-83 313.2 269 63.6
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 9.6e-80 301.2 290 56.2
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 1.6e-79 300.4 225 68.0
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.9e-75 287.0 187 76.5
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 7.6e-69 265.0 239 62.8
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 7.9e-66 255.0 232 56.9
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 8.7e-65 251.5 201 59.2
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.1e-64 251.1 236 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 2.1e-63 246.9 196 61.2
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.9e-56 223.8 210 54.8
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.9e-51 207.2 245 46.5
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.7e-44 184.1 242 45.9
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 4.7e-42 176.0 208 44.2
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.6e-40 170.2 125 64.0
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 2.2e-39 167.2 203 41.4
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 2.3e-33 147.1 96 76.0
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 9.7e-32 141.7 92 73.9
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 2.4e-30 137.1 87 78.2
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 4.1e-30 136.3 194 48.5
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 9.1e-30 135.2 120 52.5
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 9.8e-24 115.2 60 90.0
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 1.7e-15 87.8 121 52.9
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 1.9e-11 74.3 147 36.7
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 4.0e-09 66.6 37 81.1
MD17G1044200 Malus domestica HOM05D006434 ORTHO05D008069 6.4e-07 59.3 52 57.7


User provided reference genes

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