Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34948 Davidia involucrata HOM05D001894 ORTHO05D001752 8.0e-258 893.3 457 100.0
Dinv33824 Davidia involucrata HOM05D001894 ORTHO05D001752 1.6e-165 586.6 530 63.2
CSS0010377 Camellia sinensis var. sinensis HOM05D001894 ORTHO05D001752 6.6e-111 405.2 485 52.2
Rhsim10G0043000 Rhododendron simsii HOM05D001894 ORTHO05D001752 9.9e-83 311.6 523 40.5
TAR374G0479 Trochodendron aralioides HOM05D001894 ORTHO05D001752 1.4e-73 281.2 724 33.7
TAR629G1115 Trochodendron aralioides HOM05D001894 ORTHO05D001752 3.0e-71 273.5 725 33.8
Lj4A118T61 Lonicera japonica HOM05D001894 ORTHO05D001752 1.0e-66 258.5 503 40.8
vmacro05629 Vaccinium macrocarpon HOM05D001894 ORTHO05D001752 3.2e-65 253.4 546 36.4
TAR371G0849 Trochodendron aralioides HOM05D001894 ORTHO05D001752 5.9e-59 232.6 734 31.6
GSVIVG01032923001 Vitis vinifera HOM05D001894 ORTHO05D001752 8.8e-55 218.8 311 47.3
TAR622G0780 Trochodendron aralioides HOM05D001894 ORTHO05D001752 3.3e-54 216.9 298 48.0
Nn4g23398 Nelumbo nucifera HOM05D001894 ORTHO05D001752 6.5e-50 202.6 708 29.8
Haze_14436 Corylus avellana HOM05D001894 ORTHO05D001752 5.5e-49 199.5 581 32.5
Nn3g17426 Nelumbo nucifera HOM05D001894 ORTHO05D001752 3.6e-48 196.8 647 30.4
Cfa007658 Carpinus fangiana HOM05D001894 ORTHO05D001752 3.9e-47 193.4 588 32.3
QL02p067781 Quercus lobata HOM05D001894 ORTHO05D001752 1.5e-46 191.4 546 32.4
Manes.02G054400 Manihot esculenta HOM05D001894 ORTHO05D001752 7.0e-44 182.6 558 30.5
CiPaw.03G089000 Carya illinoinensis HOM05D001894 ORTHO05D001752 5.2e-39 166.4 618 29.4
Dinv10522 Davidia involucrata HOM05D001894 ORTHO05D001752 5.2e-39 166.4 389 36.2
Dinv17398 Davidia involucrata HOM05D001894 ORTHO05D001752 2.6e-38 164.1 441 35.1
CSS0001605 Camellia sinensis var. sinensis HOM05D001894 ORTHO05D001752 1.7e-37 161.4 334 37.4
MBI19_g15226_MAGBIO Magnolia biondii HOM05D001894 ORTHO05D001752 1.1e-36 158.7 337 38.9
Duzib264G0454 Durio zibethinus HOM05D001894 ORTHO05D001752 9.1e-36 155.6 592 30.6
TWI34G0746 Tripterygium wilfordii HOM05D001894 ORTHO05D001752 1.6e-35 154.8 369 36.0
Manes.01G095500 Manihot esculenta HOM05D001894 ORTHO05D001752 2.0e-35 154.5 358 33.5
QL10p019165 Quercus lobata HOM05D001894 ORTHO05D001752 4.2e-33 146.7 522 30.3
TWI32G0075 Tripterygium wilfordii HOM05D001894 ORTHO05D001752 2.1e-32 144.4 559 27.9
TWI60G1371 Tripterygium wilfordii HOM05D001894 ORTHO05D001752 2.3e-31 141.0 610 28.2
Ciclev10010896m.g Citrus clementina HOM05D001894 ORTHO05D001752 6.7e-31 139.4 538 28.8
Atru.chr8.463 Acer truncatum HOM05D001894 ORTHO05D001752 1.5e-30 138.3 452 30.3
Duzib084G0585 Durio zibethinus HOM05D001894 ORTHO05D001752 2.6e-30 137.5 269 39.0
Thecc.04G094300 Theobroma cacao HOM05D001894 ORTHO05D001752 1.7e-29 134.8 526 27.8
Duzib187G1380 Durio zibethinus HOM05D001894 ORTHO05D001752 2.8e-29 134.0 580 29.1
GSVIVG01007885001 Vitis vinifera HOM05D001894 ORTHO05D001752 4.8e-29 133.3 435 32.6
Cc07_g04150 Coffea canephora HOM05D001894 ORTHO05D001752 8.2e-29 132.5 523 27.5
CiPaw.04G056400 Carya illinoinensis HOM05D001894 ORTHO05D001752 1.8e-28 131.3 598 27.8
Cfa019314 Carpinus fangiana HOM05D001894 ORTHO05D001752 3.1e-28 130.6 314 37.3
PSO478G3010 Papaver somniferum HOM05D001894 ORTHO05D001752 1.2e-27 128.6 307 33.9
Haze_07702 Corylus avellana HOM05D001894 ORTHO05D001752 2.0e-27 127.9 314 36.6
Lj5C104T5 Lonicera japonica HOM05D001894 ORTHO05D001752 2.7e-27 127.5 216 41.2
Ciclev10018461m.g Citrus clementina HOM05D001894 ORTHO05D001752 5.9e-27 126.3 441 32.4
COL.COLO4_37591 Corchorus olitorius HOM05D001894 ORTHO05D001752 7.7e-27 125.9 262 38.5
PSO017G2493 Papaver somniferum HOM05D001894 ORTHO05D001752 1.3e-26 125.2 294 33.7
Atru.chr9.413 Acer truncatum HOM05D001894 ORTHO05D001752 2.2e-26 124.4 376 32.4
Duzib147G1389 Durio zibethinus HOM05D001894 ORTHO05D001752 6.5e-26 122.9 363 31.4
RcHm_v2.0_Chr7g0182781 Rosa chinensis HOM05D001894 ORTHO05D001752 8.5e-26 122.5 354 33.6
Hma1.2p1_0322F.1_g124800 Hydrangea macrophylla HOM05D001894 ORTHO05D001752 1.1e-25 122.1 313 33.2
Potri.015G056400 Populus trichocarpa HOM05D001894 ORTHO05D001752 1.5e-25 121.7 399 30.8
COL.COLO4_07020 Corchorus olitorius HOM05D001894 ORTHO05D001752 1.9e-25 121.3 531 27.3
Gorai.007G039700 Gossypium raimondii HOM05D001894 ORTHO05D001752 5.5e-25 119.8 294 36.1
Duzib068G1120 Durio zibethinus HOM05D001894 ORTHO05D001752 7.2e-25 119.4 182 43.4
Duzib205G0371 Durio zibethinus HOM05D001894 ORTHO05D001752 7.2e-25 119.4 294 34.0
Hma1.2p1_0060F.1_g033210 Hydrangea macrophylla HOM05D001894 ORTHO05D001752 9.4e-25 119.0 319 33.9
Prupe.5G203400 Prunus persica HOM05D001894 ORTHO05D001752 1.2e-24 118.6 370 32.4
FAN08G3261 Fragaria x ananassa HOM05D001894 ORTHO05D001752 1.6e-24 118.2 381 32.0
MD14G1210400 Malus domestica HOM05D001894 ORTHO05D001752 1.6e-24 118.2 476 30.3
FvH4_5g14040 Fragaria vesca HOM05D001894 ORTHO05D001752 2.1e-24 117.9 351 33.0
FAN13G2812 Fragaria x ananassa HOM05D001894 ORTHO05D001752 3.6e-24 117.1 351 32.5
Gohir.D11G036900 Gossypium hirsutum HOM05D001894 ORTHO05D001752 8.0e-24 115.9 413 30.8
FAN18G3960 Fragaria x ananassa HOM05D001894 ORTHO05D001752 2.3e-23 114.4 351 32.8
Gohir.A12G181800 Gossypium hirsutum HOM05D001894 ORTHO05D001752 2.3e-23 114.4 372 30.6
CiPaw.12G007900 Carya illinoinensis HOM05D001894 ORTHO05D001752 3.0e-23 114.0 312 34.6
Gohir.A11G033500 Gossypium hirsutum HOM05D001894 ORTHO05D001752 4.0e-23 113.6 395 31.6
Thecc.03G099600 Theobroma cacao HOM05D001894 ORTHO05D001752 4.0e-23 113.6 186 41.4
Cc04_g13200 Coffea canephora HOM05D001894 ORTHO05D001752 8.8e-23 112.5 426 30.0
DCAR_025426 Daucus carota HOM05D001894 ORTHO05D001752 1.2e-22 112.1 409 31.3
Potri.012G061400 Populus trichocarpa HOM05D001894 ORTHO05D001752 1.2e-22 112.1 342 31.6
Actinidia04837 Actinidia chinensis HOM05D001894 ORTHO05D001752 2.0e-22 111.3 285 34.4
Aqoxy3G03613 Aquilegia oxysepala HOM05D001894 ORTHO05D001752 2.6e-22 110.9 329 34.0
Gorai.008G198000 Gossypium raimondii HOM05D001894 ORTHO05D001752 3.4e-22 110.5 186 41.4
CiPaw.11G051700 Carya illinoinensis HOM05D001894 ORTHO05D001752 4.4e-22 110.2 310 36.5
Gohir.D09G244000 Gossypium hirsutum HOM05D001894 ORTHO05D001752 5.7e-22 109.8 182 40.1
Gorai.006G268000 Gossypium raimondii HOM05D001894 ORTHO05D001752 7.5e-22 109.4 182 40.1
Rhsim12G0151500 Rhododendron simsii HOM05D001894 ORTHO05D001752 1.3e-21 108.6 293 31.7
CANSAT64G1619 Cannabis sativa HOM05D001894 ORTHO05D001752 4.8e-21 106.7 279 32.6
Gohir.A09G243300 Gossypium hirsutum HOM05D001894 ORTHO05D001752 8.3e-21 105.9 178 39.3
Rhsim08G0147300 Rhododendron simsii HOM05D001894 ORTHO05D001752 2.4e-20 104.4 303 31.7
TAR622G0732 Trochodendron aralioides HOM05D001894 ORTHO05D001752 2.4e-20 104.4 196 36.7
Gohir.D12G184600 Gossypium hirsutum HOM05D001894 ORTHO05D001752 3.1e-20 104.0 299 33.1
vmacro17598 Vaccinium macrocarpon HOM05D001894 ORTHO05D001752 7.0e-20 102.8 291 32.3
CANSAT80G0157 Cannabis sativa HOM05D001894 ORTHO05D001752 9.1e-20 102.4 303 34.3
Sabra15G0081600 Salix brachista HOM05D001894 ORTHO05D001752 9.1e-20 102.4 231 35.9
MD06G1200700 Malus domestica HOM05D001894 ORTHO05D001752 1.2e-19 102.1 474 29.3
Gohir.D03G096000 Gossypium hirsutum HOM05D001894 ORTHO05D001752 2.3e-18 97.8 182 35.7
Gorai.003G100700 Gossypium raimondii HOM05D001894 ORTHO05D001752 3.8e-18 97.1 182 35.7
CAN.G587.41 Capsicum annuum HOM05D001894 ORTHO05D001752 8.6e-18 95.9 340 28.5
Nitab4.5_0000361g0020 Nicotiana tabacum HOM05D001894 ORTHO05D001752 5.5e-17 93.2 389 29.0
RcHm_v2.0_Chr2g0165931 Rosa chinensis HOM05D001894 ORTHO05D001752 1.2e-16 92.0 207 37.2
Migut.I00326 Erythranthe guttata HOM05D001894 ORTHO05D001752 2.8e-16 90.9 323 29.4
Peaxi162Scf00702g00418 Petunia axillaris HOM05D001894 ORTHO05D001752 8.0e-16 89.4 429 27.5
PGR044G2115 Punica granatum HOM05D001894 ORTHO05D001752 8.0e-16 89.4 295 31.5
FvH4_6g46950 Fragaria vesca HOM05D001894 ORTHO05D001752 2.3e-15 87.8 205 34.6
FAN14G4295 Fragaria x ananassa HOM05D001894 ORTHO05D001752 2.3e-15 87.8 205 34.6
Nitab4.5_0001688g0110 Nicotiana tabacum HOM05D001894 ORTHO05D001752 3.0e-15 87.4 296 29.7
MSTRG.22980 Avicennia marina HOM05D001894 ORTHO05D001752 5.2e-15 86.7 287 28.9
Gohir.A03G069500 Gossypium hirsutum HOM05D001894 ORTHO05D001752 5.2e-15 86.7 235 31.1
ECA246G4021 Erigeron canadensis HOM05D001894 ORTHO05D001752 8.9e-15 85.9 281 29.2
Manes.14G084600 Manihot esculenta HOM05D001894 ORTHO05D001752 1.2e-14 85.5 274 28.1
Prupe.3G255600 Prunus persica HOM05D001894 ORTHO05D001752 1.5e-14 85.1 520 27.3
Lj4g0026422 Lotus japonicus HOM05D001894 ORTHO05D001752 7.5e-14 82.8 274 30.7
SalBow7G0716 Salvia bowleyana HOM05D001894 ORTHO05D001752 9.8e-14 82.4 324 29.0
Sed0001778 Sechium edule HOM05D001894 ORTHO05D001752 1.3e-13 82.0 315 30.8
MSTRG.4457 Avicennia marina HOM05D001894 ORTHO05D001752 1.7e-13 81.6 208 33.2
Ca_21784_v3 Cicer arietinum L. HOM05D001894 ORTHO05D001752 1.7e-13 81.6 276 30.8
Hma1.2p1_0127F.1_g059530 Hydrangea macrophylla HOM05D001894 ORTHO05D001752 1.7e-13 81.6 175 38.3
Oeu061152.1 Olea europaea HOM05D001894 ORTHO05D001752 1.7e-13 81.6 241 32.4
Nitab4.5_0011867g0010 Nicotiana tabacum HOM05D001894 ORTHO05D001752 2.8e-13 80.9 390 27.9
EL10Ac5g11114 Beta vulgaris HOM05D001894 ORTHO05D001752 3.7e-13 80.5 304 31.2
Solyc03g115250.4 Solanum lycopersicum HOM05D001894 ORTHO05D001752 3.7e-13 80.5 390 29.0
Solyc12g038490.2 Solanum lycopersicum HOM05D001894 ORTHO05D001752 3.7e-13 80.5 427 27.6
Sopen03g034290 Solanum pennellii HOM05D001894 ORTHO05D001752 3.7e-13 80.5 390 29.0
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 3.7e-13 80.5 275 31.6
FAN02G0287 Fragaria x ananassa HOM05D001894 ORTHO05D001752 6.3e-13 79.7 101 46.5
DCAR_010148 Daucus carota HOM05D001894 ORTHO05D001752 2.4e-12 77.8 251 30.3
Lalb_Chr12g0197101 Lupinus albus HOM05D001894 ORTHO05D001752 2.4e-12 77.8 278 28.8
Sopen12g018730 Solanum pennellii HOM05D001894 ORTHO05D001752 2.4e-12 77.8 287 29.3
CAN.G4.20 Capsicum annuum HOM05D001894 ORTHO05D001752 3.1e-12 77.4 419 27.0
Lalb_Chr13g0302921 Lupinus albus HOM05D001894 ORTHO05D001752 7.0e-12 76.3 281 31.0
FAN05G1408 Fragaria x ananassa HOM05D001894 ORTHO05D001752 9.2e-12 75.9 296 29.7
HanXRQChr05g0157261 Helianthus annuus HOM05D001894 ORTHO05D001752 9.2e-12 75.9 431 26.2
SGA_v2.0_scaffold114G31926 Striga asiatica HOM05D001894 ORTHO05D001752 1.2e-11 75.5 392 27.8
Manes.06G085900 Manihot esculenta HOM05D001894 ORTHO05D001752 1.6e-11 75.1 260 28.1
DCAR_025427 Daucus carota HOM05D001894 ORTHO05D001752 2.7e-11 74.3 79 49.4
Oeu001012.1 Olea europaea HOM05D001894 ORTHO05D001752 2.7e-11 74.3 204 32.8
Sed0005687 Sechium edule HOM05D001894 ORTHO05D001752 3.5e-11 73.9 303 27.4
ATR0064G022 Amborella trichopoda HOM05D001894 ORTHO05D001752 4.5e-11 73.6 289 28.7
Glyma.05G022300 Glycine max HOM05D001894 ORTHO05D001752 4.5e-11 73.6 270 33.7
Psat4g047960 Pisum sativum HOM05D001894 ORTHO05D001752 4.5e-11 73.6 271 28.0
Solyc06g069500.3 Solanum lycopersicum HOM05D001894 ORTHO05D001752 4.5e-11 73.6 251 29.9
arahy.Tifrunner.gnm1.ann1.URK1K5 Arachis hypogaea HOM05D001894 ORTHO05D001752 1.0e-10 72.4 461 24.9
arahy.Tifrunner.gnm1.ann1.ZWJH5S Arachis hypogaea HOM05D001894 ORTHO05D001752 1.0e-10 72.4 231 30.3
MD17G1058500 Malus domestica HOM05D001894 ORTHO05D001752 1.0e-10 72.4 481 26.4
Peaxi162Scf00013g00631 Petunia axillaris HOM05D001894 ORTHO05D001752 1.0e-10 72.4 378 25.7
Phvul.003G185600 Phaseolus vulgaris HOM05D001894 ORTHO05D001752 1.0e-10 72.4 450 26.0
Sopen06g026790 Solanum pennellii HOM05D001894 ORTHO05D001752 1.7e-10 71.6 377 26.8
Glyma.17G077400 Glycine max HOM05D001894 ORTHO05D001752 2.3e-10 71.2 309 29.8
Oeu061151.1 Olea europaea HOM05D001894 ORTHO05D001752 2.9e-10 70.9 281 28.5
VMungo1215G1196 Vigna mungo HOM05D001894 ORTHO05D001752 3.8e-10 70.5 295 28.1
AUR62008512 Chenopodium quinoa HOM05D001894 ORTHO05D001752 5.0e-10 70.1 330 27.9
Lalb_Chr07g0178281 Lupinus albus HOM05D001894 ORTHO05D001752 5.0e-10 70.1 279 29.4
Migut.D01693 Erythranthe guttata HOM05D001894 ORTHO05D001752 8.6e-10 69.3 422 25.8
MELO3C002018.2 Cucumis melo HOM05D001894 ORTHO05D001752 1.1e-09 68.9 311 29.6
CAN.G479.18 Capsicum annuum HOM05D001894 ORTHO05D001752 1.9e-09 68.2 416 25.2
ClCG04G011900 Citrullus lanatus HOM05D001894 ORTHO05D001752 1.9e-09 68.2 311 28.0
Hund02596 Selenicereus undatus HOM05D001894 ORTHO05D001752 5.6e-09 66.6 304 30.9
CsaV3_1G005880 Cucumis sativus L. HOM05D001894 ORTHO05D002926 7.3e-09 66.2 283 30.0
Ah.02g113970 Amaranthus hybridus HOM05D001894 ORTHO05D001752 2.8e-08 64.3 345 26.4
Eucgr.K02518 Eucalyptus grandis HOM05D001894 ORTHO05D001752 2.8e-08 64.3 241 30.7
Medtr4g109420 Medicago truncatula HOM05D001894 ORTHO05D001752 2.8e-08 64.3 158 31.6
Peaxi162Scf00201g00131 Petunia axillaris HOM05D001894 ORTHO05D001752 2.8e-08 64.3 254 30.3
AT5G07940 Arabidopsis thaliana HOM05D001894 ORTHO05D001752 3.6e-08 63.9 166 33.1
DCAR_014034 Daucus carota HOM05D001894 ORTHO05D001752 4.7e-08 63.5 284 28.9
A04p25640 Brassica napus HOM05D001894 ORTHO05D001752 1.0e-07 62.4 203 34.0
BraA04t18068Z Brassica rapa HOM05D001894 ORTHO05D001752 1.0e-07 62.4 203 34.0
AUR62021578 Chenopodium quinoa HOM05D001894 ORTHO05D001752 1.0e-07 62.4 302 28.1
Ah.11g047940 Amaranthus hybridus HOM05D001894 ORTHO05D001752 1.4e-07 62.0 292 28.8
HanXRQChr15g0488851 Helianthus annuus HOM05D001894 ORTHO05D001752 1.4e-07 62.0 184 32.6
Lsat_1_v5_gn_5_23200 Lactuca sativa HOM05D001894 ORTHO05D001752 1.8e-07 61.6 275 28.0
Hund09881 Selenicereus undatus HOM05D001894 ORTHO05D001752 1.8e-07 61.6 542 25.5
Lsat_1_v5_gn_4_172361 Lactuca sativa HOM05D001894 ORTHO05D001752 2.3e-07 61.2 254 29.9
BcaB01g05685 Brassica carinata HOM05D001894 ORTHO05D001752 3.1e-07 60.8 196 32.7
Carub.0006s0683 Capsella rubella HOM05D001894 ORTHO05D001752 4.0e-07 60.5 222 29.7
Oeu008254.3 Olea europaea HOM05D001894 ORTHO05D001752 6.8e-07 59.7 281 27.0
TPR.G2049 Trifolium pratense HOM05D001894 ORTHO05D001752 1.2e-06 58.9 281 26.0
C04p62790 Brassica napus HOM05D001894 ORTHO05D001752 1.5e-06 58.5 199 33.2
Thhalv10012438m.g Eutrema salsugineum HOM05D001894 ORTHO05D001752 1.5e-06 58.5 388 25.3
Zm00001eb400280 Zea mays HOM05D001894 ORTHO05D001752 1.5e-06 58.5 212 26.9
CARHR205250 Cardamine hirsuta HOM05D001894 ORTHO05D001752 2.6e-06 57.8 270 29.3
MD09G1065800 Malus domestica HOM05D001894 ORTHO05D001752 2.6e-06 57.8 468 25.6
CDE02G2315 Ceratophyllum demersum HOM05D001894 ORTHO05D001752 3.4e-06 57.4 351 25.4
BcaC03g13202 Brassica carinata HOM05D001894 ORTHO05D001752 5.8e-06 56.6 228 31.6
Cpa.g.sc94.26 Carica papaya HOM05D001894 ORTHO05D001752 9.8e-06 55.8 80 45.0


User provided reference genes

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