Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 3.3e-176 621.7 338 100.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.3e-151 540.0 343 80.5
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.2e-148 529.3 346 81.2
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.5e-147 524.6 340 78.5
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.0e-145 520.4 343 76.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.0e-145 520.4 344 75.3
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 3.0e-145 518.8 348 78.4
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 5.2e-145 518.1 346 78.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.2e-144 516.9 346 80.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.5e-144 516.5 337 84.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 4.4e-144 515.0 340 76.5
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 5.7e-144 514.6 347 78.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 7.5e-144 514.2 340 75.3
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.3e-143 513.5 348 77.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-143 513.5 341 79.2
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.7e-143 513.1 346 78.6
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.8e-143 512.3 347 77.2
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.7e-143 511.9 346 78.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.8e-143 511.5 336 78.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 8.2e-143 510.8 340 75.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-142 510.4 340 74.1
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.8e-142 509.6 340 74.7
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.8e-142 509.6 346 78.3
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.4e-142 509.2 334 81.4
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.1e-142 508.8 343 80.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.1e-142 508.8 346 74.6
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 7.0e-142 507.7 344 74.4
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.0e-141 506.1 346 73.4
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.0e-141 506.1 346 76.9
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.9e-141 504.6 339 80.8
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 7.7e-141 504.2 341 76.0
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-140 503.1 356 72.2
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.7e-140 503.1 347 80.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.8e-140 501.9 339 72.0
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.8e-140 501.9 346 78.3
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 5.0e-140 501.5 346 74.3
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.9e-139 499.6 344 75.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.9e-139 499.6 346 74.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.2e-139 498.8 339 74.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.2e-139 497.7 340 73.8
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.6e-138 496.5 346 75.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.6e-138 496.5 344 76.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.6e-138 495.4 347 81.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.1e-138 494.6 340 80.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-137 493.4 340 80.3
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-137 493.4 347 75.5
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.8e-137 493.0 339 75.2
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.0e-137 492.3 340 75.9
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 4.0e-137 491.9 342 76.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.2e-137 491.5 342 76.3
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 8.8e-137 490.7 343 73.2
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.2e-136 490.3 348 74.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.2e-136 490.3 347 75.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.7e-136 488.0 345 80.3
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.7e-135 485.3 347 70.6
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 4.8e-135 485.0 348 72.4
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 6.3e-135 484.6 362 67.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.4e-134 483.4 337 78.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.4e-134 483.4 348 76.7
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-134 483.4 340 78.2
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.8e-134 483.0 347 72.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 1.8e-134 483.0 340 77.9
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.4e-134 482.6 343 72.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 7.0e-134 481.1 345 74.8
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 7.0e-134 481.1 344 77.9
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.2e-133 480.3 348 72.1
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.6e-133 479.9 343 78.1
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.6e-133 479.9 341 74.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.7e-133 479.2 340 70.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 2.7e-133 479.2 349 70.5
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.5e-133 478.8 342 77.8
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.5e-133 478.8 347 71.5
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 4.5e-133 478.4 343 73.5
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 4.5e-133 478.4 349 68.8
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.0e-132 477.2 342 77.5
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.3e-132 476.9 342 73.1
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 3.2e-131 472.2 347 66.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.2e-131 471.9 343 72.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 4.7e-130 468.4 340 73.8
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.0e-130 467.6 341 69.2
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 8.0e-130 467.6 345 67.2
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.0e-129 467.2 341 68.6
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.2e-128 463.8 338 71.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.6e-128 462.6 338 70.7
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.4e-128 462.2 340 70.9
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.5e-128 461.1 347 72.9
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.3e-127 460.3 341 69.5
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 4.9e-127 458.4 351 73.5
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.9e-127 458.4 345 66.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 8.3e-127 457.6 341 69.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.8e-126 456.4 345 72.2
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 9.2e-126 454.1 300 76.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.2e-125 453.8 301 83.1
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.9e-124 449.1 324 68.5
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.0e-124 448.4 346 71.4
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.1e-123 447.2 445 57.1
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.9e-123 446.4 346 69.9
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.3e-123 444.5 336 66.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.6e-122 443.4 355 66.5
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.0e-121 439.1 237 90.3
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 5.2e-121 438.3 341 70.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.5e-120 436.8 348 70.1
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.4e-120 435.3 348 70.1
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.7e-119 433.3 351 68.1
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 6.4e-119 431.4 337 62.9
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.4e-118 429.5 340 60.3
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 5.4e-118 428.3 346 67.3
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 4.6e-117 425.2 340 61.2
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.0e-116 424.1 341 64.2
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.3e-116 423.7 345 64.3
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.3e-116 423.7 426 62.7
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 8.6e-116 421.0 346 67.1
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.5e-115 419.5 336 67.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.3e-115 419.1 347 62.2
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 9.5e-115 417.5 341 66.9
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 8.0e-114 414.5 350 63.7
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.4e-113 413.7 343 65.3
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.4e-113 413.7 343 63.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.3e-113 412.9 336 61.0
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.5e-112 410.2 341 62.5
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.0e-112 409.8 339 58.7
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.6e-112 409.5 339 60.5
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.3e-111 407.1 340 59.4
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.7e-111 406.8 292 75.3
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 2.2e-111 406.4 340 57.4
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 8.3e-111 404.4 340 60.0
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.9e-110 403.3 341 64.8
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-110 402.9 338 59.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 8.6e-108 394.4 342 64.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.4e-105 387.1 335 63.9
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.5e-104 383.6 295 68.8
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 7.5e-104 381.3 339 55.5
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.7e-103 380.2 291 73.2
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.5e-101 372.5 355 62.3
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 3.5e-101 372.5 297 74.4
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.5e-91 340.5 296 60.1
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 5.2e-89 332.0 243 72.8
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.2e-86 322.8 187 86.6
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-85 320.9 218 76.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.5e-85 319.3 290 56.6
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 4.6e-85 318.9 276 67.0
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.7e-84 317.0 244 73.8
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.0e-84 316.2 336 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 7.3e-83 311.6 332 46.7
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 7.3e-83 311.6 243 68.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.6e-82 309.3 336 44.0
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 3.1e-81 306.2 172 90.1
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 7.6e-80 301.6 332 47.9
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 4.2e-78 295.8 237 58.6
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.8e-76 290.4 283 53.7
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.3e-76 290.0 243 62.1
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 5.1e-76 288.9 281 54.1
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.3e-75 286.2 235 58.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.5e-72 277.3 338 40.5
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.7e-71 273.9 331 48.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.3e-68 264.2 235 63.8
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.3e-68 263.5 235 56.6
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.9e-67 260.4 230 52.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 1.3e-66 257.7 229 55.9
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 3.1e-65 253.1 145 83.4
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 6.0e-61 238.8 242 51.7
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.0e-60 236.5 130 85.4
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.2e-50 201.8 140 72.9
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 2.7e-45 186.8 102 86.3
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.7e-42 176.4 115 78.3
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.9e-41 172.2 112 77.7
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.4e-38 164.5 124 68.5
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.1e-30 138.3 116 63.8
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.4e-27 126.3 69 79.7
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 9.7e-27 125.2 339 28.3
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 2.3e-20 104.0 149 34.9
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.3e-18 95.5 54 83.3
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 8.3e-18 95.5 54 68.5
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.6e-11 73.9 140 35.0
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.7e-10 71.2 103 42.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 7.8e-08 62.4 45 68.9


User provided reference genes

Program Settings