Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 9.0e-84 313.5 158 100.0
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 3.2e-41 172.2 147 66.7
Lj2A1168T22 Lonicera japonica HOM05D008098 ORTHO05D009893 2.0e-38 162.9 147 61.2
Lj9A530T23 Lonicera japonica HOM05D008098 ORTHO05D009893 2.0e-38 162.9 147 61.2
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 2.3e-34 149.4 147 60.5
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 2.1e-32 142.9 147 57.1
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 1.0e-31 140.6 145 57.2
GSVIVG01001187001 Vitis vinifera HOM05D008098 ORTHO05D009893 1.5e-30 136.7 165 48.5
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 3.7e-29 132.1 145 54.5
Haze_04677 Corylus avellana HOM05D008098 ORTHO05D009893 6.6e-26 121.3 157 47.8
Nn1g02382 Nelumbo nucifera HOM05D008098 ORTHO05D009893 9.5e-25 117.5 159 47.2
Cfa006173 Carpinus fangiana HOM05D008098 ORTHO05D009893 2.1e-24 116.3 163 44.8
TAR260G0007 Trochodendron aralioides HOM05D008098 ORTHO05D009893 3.6e-24 115.5 161 46.0
Dinv14021 Davidia involucrata HOM05D008098 ORTHO05D009893 6.8e-23 111.3 147 47.6
CiPaw.07G089300 Carya illinoinensis HOM05D008098 ORTHO05D009893 1.2e-22 110.5 140 47.9
TAR633G1927 Trochodendron aralioides HOM05D008098 ORTHO05D009893 1.2e-22 110.5 150 48.7
TAR633G0062 Trochodendron aralioides HOM05D008098 ORTHO05D009893 2.2e-21 106.3 150 46.0
CSS0028803 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 6.4e-21 104.8 114 58.8
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 8.3e-21 104.4 145 44.1
Sc17g0001270 Simmondsia chinensis HOM05D008098 ORTHO05D009893 1.6e-19 100.1 138 44.9
CSS0050104 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 4.6e-19 98.6 114 56.1
Migut.D00327 Erythranthe guttata HOM05D008098 ORTHO05D009893 1.5e-17 93.6 138 41.3
Atru.chr5.1485 Acer truncatum HOM05D008098 ORTHO05D009893 1.9e-17 93.2 160 40.0
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 7.3e-17 91.3 144 42.4
MSTRG.12554 Avicennia marina HOM05D008098 ORTHO05D009893 2.1e-16 89.7 137 43.1
Hma1.2p1_1572F.1_g291470 Hydrangea macrophylla HOM05D008098 ORTHO05D009893 2.8e-16 89.4 140 42.9
COL.COLO4_11875 Corchorus olitorius HOM05D008098 ORTHO05D009893 4.7e-16 88.6 143 42.0
Oeu023884.1 Olea europaea HOM05D008098 ORTHO05D009893 8.1e-16 87.8 123 43.1
Hund02840 Selenicereus undatus HOM05D008098 ORTHO05D009893 1.4e-15 87.0 148 41.9
EL10Ac5g10528 Beta vulgaris HOM05D008098 ORTHO05D009893 2.0e-14 83.2 159 37.1
Prupe.1G018100 Prunus persica HOM05D008098 ORTHO05D009893 2.0e-14 83.2 149 36.2
MSTRG.17457 Avicennia marina HOM05D008098 ORTHO05D009893 3.4e-14 82.4 137 40.1
Potri.002G050100 Populus trichocarpa HOM05D008098 ORTHO05D009893 1.7e-13 80.1 147 34.7
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 2.2e-13 79.7 135 36.3
Manes.15G031000 Manihot esculenta HOM05D008098 ORTHO05D009893 2.2e-13 79.7 160 33.8
MSTRG.18252 Avicennia marina HOM05D008098 ORTHO05D009893 3.7e-13 79.0 84 48.8
DCAR_005861 Daucus carota HOM05D008098 ORTHO05D009893 1.1e-12 77.4 141 36.9
DCAR_002716 Daucus carota HOM05D008098 ORTHO05D009893 7.1e-12 74.7 140 39.3
Prupe.8G237300 Prunus persica HOM05D008098 ORTHO05D009893 9.2e-12 74.3 139 36.0
Ciclev10022764m.g Citrus clementina HOM05D008098 ORTHO05D009893 1.2e-11 73.9 148 36.5
Aqoxy5G00430 Aquilegia oxysepala HOM05D008098 ORTHO05D009893 2.1e-11 73.2 139 32.4
FAN20G2698 Fragaria x ananassa HOM05D008098 ORTHO05D009893 2.3e-10 69.7 140 35.0
FAN24G1322 Fragaria x ananassa HOM05D008098 ORTHO05D009893 8.6e-10 67.8 140 34.3
SGA_v2.0_scaffold1G00510 Striga asiatica HOM05D008098 ORTHO05D009893 1.5e-09 67.0 137 35.0
Gohir.D09G220150 Gossypium hirsutum HOM05D008098 ORTHO05D009893 2.5e-09 66.2 107 33.6
Sabra05G0162400 Salix brachista HOM05D008098 ORTHO05D009893 4.3e-09 65.5 141 34.0
SalBow6G1276 Salvia bowleyana HOM05D008098 ORTHO05D009893 4.3e-09 65.5 94 39.4
Atru.chr4.2423 Acer truncatum HOM05D008098 ORTHO05D009893 7.3e-09 64.7 140 33.6
CSS0015317 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 9.5e-09 64.3 93 38.7
FAN27G1076 Fragaria x ananassa HOM05D008098 ORTHO05D009893 9.5e-09 64.3 140 32.9
SalBow4G2107 Salvia bowleyana HOM05D008098 ORTHO05D009893 9.5e-09 64.3 115 34.8
RcHm_v2.0_Chr6g0290431 Rosa chinensis HOM05D008098 ORTHO05D009893 2.1e-08 63.2 157 32.5
Dinv17090 Davidia involucrata HOM05D008098 ORTHO05D009893 2.8e-08 62.8 143 32.2
Rhsim04G0199800 Rhododendron simsii HOM05D008098 ORTHO05D009893 3.6e-08 62.4 139 35.3
Manes.01G205500 Manihot esculenta HOM05D008098 ORTHO05D009893 8.1e-08 61.2 135 32.6
Thecc.01G274000 Theobroma cacao HOM05D008098 ORTHO05D009893 1.1e-07 60.8 74 43.2
Actinidia23529 Actinidia chinensis HOM05D008098 ORTHO05D009893 6.8e-07 58.2 144 34.7
C04p29970 Brassica napus HOM05D013860 ORTHO05D009893 6.8e-07 58.2 52 50.0
BolC4t24530H Brassica oleracea HOM05D013860 ORTHO05D009893 6.8e-07 58.2 52 50.0
TAR636G0174 Trochodendron aralioides HOM05D000690 ORTHO05D001022 6.8e-07 58.2 69 39.1
Aa31LG6G420 Aethionema arabicum HOM05D000562 ORTHO05D000388 8.9e-07 57.8 68 39.7
Ah.02g111250 Amaranthus hybridus HOM05D008098 ORTHO05D009893 8.9e-07 57.8 157 34.4
Carub.0005s2991 Capsella rubella HOM05D013860 ORTHO05D009893 8.9e-07 57.8 47 51.1
AT3G63230 Arabidopsis thaliana HOM05D013860 ORTHO05D009893 1.2e-06 57.4 76 39.5
CAN.G1445.4 Capsicum annuum HOM05D000562 ORTHO05D000388 1.5e-06 57.0 68 41.2
Sp5g00310 Schrenkiella parvula HOM05D013860 ORTHO05D009893 1.5e-06 57.0 60 46.7
GSVIVG01035745001 Vitis vinifera HOM05D000690 ORTHO05D001022 2.0e-06 56.6 67 38.8
A04p00150 Brassica napus HOM05D013860 ORTHO05D009893 2.6e-06 56.2 52 50.0
BraA04t15737Z Brassica rapa HOM05D013860 ORTHO05D009893 2.6e-06 56.2 52 50.0
Gohir.D08G205000 Gossypium hirsutum HOM05D008098 ORTHO05D009893 2.6e-06 56.2 141 34.8
AL7G36920 Arabidopsis lyrata HOM05D000562 ORTHO05D000388 3.4e-06 55.8 66 39.4
Gorai.004G217100 Gossypium raimondii HOM05D008098 ORTHO05D009893 3.4e-06 55.8 144 34.0
Gorai.006G098700 Gossypium raimondii HOM05D000690 ORTHO05D001022 3.4e-06 55.8 76 31.6
MD15G1113700 Malus domestica HOM05D000690 ORTHO05D001022 3.4e-06 55.8 56 39.3
PSO170G2914 Papaver somniferum HOM05D008098 ORTHO05D009893 3.4e-06 55.8 85 40.0
SMO293G0022 Selaginella moellendorffii HOM05D000562 ORTHO05D000388 3.4e-06 55.8 60 45.0
Ca_02228_v3 Cicer arietinum L. HOM05D000690 ORTHO05D002679 4.4e-06 55.5 80 37.5
Oeu033991.1 Olea europaea HOM05D000690 ORTHO05D001022 4.4e-06 55.5 78 41.0
THA.LOC104810583 Tarenaya hassleriana HOM05D000562 ORTHO05D000388 4.4e-06 55.5 65 47.7
C09p05110 Brassica napus HOM05D000562 ORTHO05D000388 5.8e-06 55.1 48 47.9
BolC9t53434H Brassica oleracea HOM05D000562 ORTHO05D000388 5.8e-06 55.1 46 47.8
FAN11G2600 Fragaria x ananassa HOM05D025153 ORTHO05D009893 5.8e-06 55.1 46 50.0
Hma1.2p1_0745F.1_g212190 Hydrangea macrophylla HOM05D000690 ORTHO05D001022 5.8e-06 55.1 53 41.5
Hma1.2p1_1572F.1_g291335 Hydrangea macrophylla HOM05D000690 ORTHO05D001022 5.8e-06 55.1 53 41.5
AL5G46080 Arabidopsis lyrata HOM05D013860 ORTHO05D009893 7.6e-06 54.7 76 36.8
BcaC04g23751 Brassica carinata HOM05D000690 ORTHO05D000388 7.6e-06 54.7 48 47.9
BraA09t36109Z Brassica rapa HOM05D000562 ORTHO05D000388 7.6e-06 54.7 48 47.9
CiPaw.01G167900 Carya illinoinensis HOM05D000690 ORTHO05D001022 7.6e-06 54.7 57 38.6
Duzib235G0332 Durio zibethinus HOM05D000690 ORTHO05D001022 7.6e-06 54.7 60 40.0
FAN21G3128 Fragaria x ananassa HOM05D025153 ORTHO05D009893 7.6e-06 54.7 89 36.0
arahy.Tifrunner.gnm1.ann1.HZHH6G Arachis hypogaea HOM05D000562 ORTHO05D000388 9.9e-06 54.3 68 38.2
A09p04730 Brassica napus HOM05D000562 ORTHO05D000388 9.9e-06 54.3 48 47.9
SGA_v2.0_scaffold148G36431 Striga asiatica HOM05D030106 ORTHO05D030155 9.9e-06 54.3 71 40.8
TAR624G0598 Trochodendron aralioides HOM05D000690 ORTHO05D001022 9.9e-06 54.3 84 36.9
unitig_699.g19312 Utricularia gibba HOM05D008098 ORTHO05D009893 9.9e-06 54.3 68 39.7


User provided reference genes

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