Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 0.0e+00 1084.3 557 100.0
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 3.1e-264 914.8 514 91.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.1e-245 853.2 573 78.9
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 8.8e-243 843.6 530 82.5
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 4.1e-240 834.7 539 80.9
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.9e-233 812.0 522 80.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 9.5e-229 797.0 530 78.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.1e-228 795.8 537 77.3
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 3.4e-226 788.5 537 75.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 3.9e-222 775.0 553 75.0
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.9e-221 772.7 542 74.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.9e-221 772.7 533 75.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.5e-221 772.3 532 75.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.5e-221 772.3 532 75.9
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.5e-221 770.4 532 75.6
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.1e-219 765.4 527 75.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.9e-217 758.8 531 74.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.4e-216 755.7 527 75.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.1e-214 748.0 514 74.7
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.3e-213 745.0 514 74.5
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.6e-213 744.6 514 74.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 9.5e-213 743.8 526 73.0
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.5e-213 743.8 526 73.0
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.6e-212 743.0 534 73.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 8.1e-212 740.7 526 72.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 8.1e-212 740.7 527 71.9
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.5e-210 736.5 522 73.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.6e-210 735.7 521 73.5
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.4e-210 734.9 526 72.4
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 5.8e-210 734.6 544 72.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.9e-209 732.3 539 71.2
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 8.4e-209 730.7 523 72.5
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 8.4e-209 730.7 543 69.4
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.1e-208 730.3 523 72.7
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.1e-208 728.4 524 72.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.6e-207 726.5 498 75.3
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.1e-207 726.1 527 71.7
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.5e-205 719.2 521 72.2
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 7.3e-205 717.6 538 70.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.1e-203 712.2 547 69.5
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 3.4e-202 708.8 534 69.7
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.2e-201 706.1 512 71.1
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 3.8e-201 705.3 521 70.1
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 6.4e-201 704.5 545 67.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.4e-200 702.6 544 67.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.2e-199 700.3 551 66.8
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.5e-197 692.6 521 69.7
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.3e-197 691.8 515 70.5
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 6.2e-196 688.0 525 68.8
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 8.1e-196 687.6 542 67.5
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.1e-195 687.2 526 68.8
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 5.3e-195 684.9 538 70.1
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.9e-195 684.5 551 66.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 9.0e-195 684.1 517 71.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.4e-192 676.0 561 65.6
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 7.1e-192 674.5 515 69.3
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.1e-191 672.9 522 68.2
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.7e-191 672.5 537 68.2
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.9e-190 668.7 518 68.9
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.5e-189 666.0 515 68.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-188 663.3 500 71.4
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.1e-188 662.9 521 67.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.3e-187 658.3 514 67.3
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 3.4e-186 655.6 571 62.5
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.2e-185 652.9 536 66.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.9e-182 642.1 436 75.5
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.8e-179 633.3 537 65.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.7e-172 609.0 536 61.8
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.4e-171 607.1 516 65.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.6e-170 601.3 570 62.3
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.2e-160 569.3 408 74.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.6e-159 565.8 402 73.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 8.8e-158 561.2 501 61.5
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.5e-157 559.7 501 61.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.3e-155 552.0 467 62.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-150 537.0 341 80.9
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.5e-138 496.1 491 53.0
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.3e-137 494.2 351 72.1
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.4e-131 473.4 504 54.8
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.0e-130 470.3 347 72.3
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 4.1e-123 446.0 425 56.7
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-115 420.6 387 58.9
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.4e-108 395.6 490 50.0
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.1e-95 354.0 418 54.3
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.1e-95 354.0 454 48.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.9e-88 330.9 296 65.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 6.6e-81 305.8 201 75.6
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.5e-77 293.1 450 41.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-76 291.2 463 39.5
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 4.9e-76 289.7 459 38.3
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.9e-75 287.7 476 38.9
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 9.3e-75 285.4 468 38.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.3e-75 285.4 471 38.9
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-73 281.2 457 38.3
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.3e-73 280.8 444 39.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.9e-72 277.7 447 40.9
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 5.6e-72 276.2 522 38.9
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 9.6e-72 275.4 496 38.7
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.6e-71 274.6 422 42.2
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.8e-71 273.1 449 39.2
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.1e-71 272.3 432 40.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-70 271.6 466 38.2
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.8e-70 271.2 442 40.5
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.0e-70 270.0 466 38.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-69 268.5 514 37.4
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 4.5e-69 266.5 446 39.9
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-68 264.2 446 39.5
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 8.4e-68 262.3 469 36.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-66 256.9 454 39.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-65 255.4 445 38.7
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-65 255.0 446 37.4
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-65 254.6 445 39.3
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.1e-65 253.1 466 37.1
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.9e-64 251.1 447 38.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.5e-64 250.8 378 41.5
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-63 248.1 422 38.2
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.8e-63 247.3 424 38.2
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 4.8e-63 246.5 166 74.1
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 8.1e-63 245.7 422 37.9
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 5.3e-62 243.0 446 37.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 5.3e-62 243.0 429 37.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.5e-61 241.5 446 37.2
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.0e-61 241.1 444 37.8
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 8.4e-60 235.7 511 35.6
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.3e-57 227.6 373 37.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 3.0e-57 227.3 409 36.9
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 7.4e-56 222.6 389 39.6
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.6e-55 221.5 384 37.8
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 8.2e-55 219.2 441 34.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.0e-53 214.5 394 37.1
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 7.9e-50 202.6 150 64.7
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-48 198.4 392 35.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.3e-46 189.9 411 34.5
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.2e-45 188.7 217 51.6
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-41 174.9 264 42.4
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.4e-40 169.5 295 35.3
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 8.2e-39 166.0 189 56.6
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.1e-38 163.7 452 30.8
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.3e-36 158.7 108 67.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.0e-33 149.1 238 39.5
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.4e-33 148.7 109 71.6
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 8.8e-33 146.0 92 77.2
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.6e-32 144.4 266 38.0
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.1e-30 137.5 274 40.5
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-25 121.7 145 47.6
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 6.7e-25 119.8 182 41.8
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 5.7e-24 116.7 163 44.8
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 7.5e-24 116.3 188 38.8
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 9.7e-24 115.9 188 38.3
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.1e-22 112.5 80 73.8
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.4e-22 112.1 127 52.0
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 7.0e-22 109.8 143 44.8
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.2e-19 100.5 110 49.1
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 9.4e-19 99.4 65 69.2
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-18 98.6 61 77.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.6e-18 97.4 118 41.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 2.3e-17 94.7 60 73.3
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.4e-16 90.9 59 69.5
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.7e-16 90.1 83 59.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-15 89.0 336 27.1
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 3.7e-15 87.4 130 44.6
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 3.7e-15 87.4 145 41.4
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.1e-14 85.9 314 28.7
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 7.0e-14 83.2 102 52.9
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.6e-13 82.0 56 73.2
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 5.9e-13 80.1 110 38.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.0e-12 79.3 301 27.9
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.5e-11 74.7 80 50.0
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.2e-11 73.9 131 35.9
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 4.2e-11 73.9 106 37.7
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.2e-11 73.2 76 56.6
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-10 72.4 150 33.3
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.2e-10 72.4 159 34.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.2e-10 72.4 139 33.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.2e-10 72.4 73 53.4
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.0e-09 69.3 88 45.5
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 2.6e-08 64.7 60 53.3
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.6e-08 64.7 145 33.1
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 3.4e-08 64.3 92 45.7
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.4e-08 63.9 46 73.9
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 5.7e-08 63.5 123 32.5


User provided reference genes

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