Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.4e-224 781.9 431 100.0
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.7e-199 698.7 430 85.8
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.0e-178 629.4 444 79.3
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-176 623.6 430 77.9
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.2e-176 621.7 430 76.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.7e-175 618.2 433 76.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.4e-174 616.7 430 75.8
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.7e-172 608.6 430 75.1
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.2e-168 595.5 430 74.4
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 7.7e-162 574.3 430 72.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 8.0e-159 564.3 430 69.3
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.8e-158 563.1 430 70.7
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.2e-157 560.5 430 70.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.2e-157 560.5 431 74.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.0e-157 559.7 430 69.8
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.7e-156 556.6 430 71.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.2e-156 556.2 430 69.1
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.4e-155 553.5 407 72.2
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.6e-154 550.1 436 69.0
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.5e-154 548.5 439 68.6
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 2.9e-153 545.8 437 69.3
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 5.0e-153 545.0 437 68.4
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 6.6e-153 544.7 430 67.9
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.1e-152 543.9 430 67.7
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.3e-152 542.3 432 70.1
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 3.6e-151 538.9 401 70.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 6.1e-151 538.1 432 67.4
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.1e-150 535.8 431 66.6
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 8.9e-150 534.3 432 66.4
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.2e-149 533.9 431 67.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.6e-149 532.7 449 65.9
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.4e-149 532.3 435 68.5
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 5.8e-149 531.6 431 66.4
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.9e-148 529.3 435 64.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.4e-147 525.0 426 66.2
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 7.0e-147 524.6 429 70.9
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.2e-146 523.9 430 65.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.0e-146 521.5 435 68.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.3e-145 520.4 434 64.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.3e-145 520.4 432 65.3
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 3.0e-145 519.2 432 66.2
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 3.0e-145 519.2 430 65.1
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.9e-145 518.8 426 65.5
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 3.9e-145 518.8 431 65.0
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.1e-144 517.3 435 64.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-144 515.8 426 65.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.2e-143 513.8 430 66.5
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.1e-143 513.1 431 65.4
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.8e-142 510.0 431 65.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.0e-142 508.8 432 64.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.0e-142 508.8 426 64.1
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.2e-142 508.4 430 63.5
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.8e-142 508.1 426 64.1
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.5e-141 506.9 432 68.1
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.4e-141 505.8 430 63.5
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-140 502.7 461 60.3
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 3.7e-140 502.3 430 63.3
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 4.9e-140 501.9 431 65.9
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.1e-139 500.7 430 64.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.9e-139 500.0 430 64.2
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.1e-139 498.8 430 64.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.0e-137 494.2 429 62.0
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.3e-137 493.8 482 58.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.3e-137 493.0 449 61.2
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.9e-137 492.3 426 59.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.9e-136 490.0 401 66.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.3e-136 489.2 447 62.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.6e-136 488.4 430 59.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.6e-136 488.4 429 61.3
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.2e-135 487.3 431 63.8
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.1e-135 486.5 426 62.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.8e-135 486.1 426 58.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.8e-135 486.1 355 71.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 6.2e-135 485.0 411 64.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.8e-134 483.4 426 60.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.6e-133 479.6 426 58.9
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 7.5e-133 478.0 436 63.3
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.9e-132 476.1 436 61.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 3.7e-132 475.7 403 68.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.9e-132 475.3 426 62.2
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.4e-131 473.8 433 62.8
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.5e-130 469.2 438 61.4
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 4.6e-130 468.8 346 72.0
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 5.1e-129 465.3 430 60.5
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 6.6e-129 464.9 430 60.2
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.6e-127 459.1 426 59.2
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.1e-126 456.1 482 56.0
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.0e-125 453.4 438 58.0
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 9.9e-125 451.1 430 60.5
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 6.4e-124 448.4 427 57.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 6.4e-124 448.4 430 58.4
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 6.4e-124 448.4 426 60.1
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.9e-123 446.8 531 50.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 6.0e-122 441.8 416 59.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 6.0e-122 441.8 376 65.4
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.7e-121 440.3 427 57.1
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-120 437.6 427 57.1
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.3e-120 435.6 426 59.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.3e-119 434.1 444 57.9
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.6e-119 433.7 437 58.1
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.8e-119 432.2 425 54.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 6.2e-119 431.8 377 66.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 8.1e-119 431.4 429 56.6
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-118 430.3 427 56.2
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 3.1e-118 429.5 426 58.7
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.3e-118 428.7 433 57.0
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.5e-117 427.2 430 58.4
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.3e-116 424.1 406 61.6
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 8.4e-116 421.4 427 55.0
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 8.4e-116 421.4 426 56.6
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-115 421.0 478 52.7
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.2e-115 419.5 478 52.5
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.6e-114 417.2 427 54.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.6e-114 417.2 431 58.5
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-114 416.4 426 55.4
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 6.0e-114 415.2 463 52.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.0e-113 412.9 423 59.8
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.1e-112 411.0 426 54.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 3.6e-111 406.0 366 58.7
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 6.9e-110 401.7 426 54.9
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-109 399.8 426 54.7
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.9e-108 396.4 438 53.0
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.2e-107 392.9 426 52.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.1e-106 390.2 406 54.7
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.1e-106 390.2 426 56.1
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.0e-105 387.9 337 61.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.3e-104 382.5 352 59.4
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 6.2e-103 378.6 426 52.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.6e-101 373.2 386 58.5
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.6e-101 373.2 412 53.4
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 4.5e-101 372.5 430 50.9
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.9e-99 367.1 430 50.7
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.5e-99 365.5 405 54.1
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 7.1e-91 338.6 426 51.4
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.3e-89 334.3 430 47.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 6.7e-81 305.4 363 49.9
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.1e-78 298.1 430 46.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 7.9e-74 282.0 384 42.7
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 8.2e-71 271.9 154 84.4
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 2.0e-69 267.3 400 40.8
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.8e-65 254.2 272 49.3
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 8.8e-65 251.9 273 48.0
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.4e-62 243.8 154 75.3
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.3e-62 242.7 156 71.2
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 7.7e-61 238.8 273 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.1e-59 235.0 248 48.0
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.2e-58 231.5 240 57.5
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.8e-54 217.6 321 45.2
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 5.4e-46 189.5 277 44.0
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 4.9e-39 166.4 230 52.6
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 6.3e-39 166.0 114 69.3
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.3e-31 139.0 122 66.4
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.5e-29 133.7 180 38.9
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 8.9e-25 119.0 175 34.9
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.8e-24 116.3 94 68.1
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.2e-22 110.5 73 69.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 7.8e-21 105.9 117 58.1
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.3e-20 104.4 123 41.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.2e-16 92.0 59 71.2
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.4e-15 86.3 96 52.1
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 8.9e-09 65.9 42 64.3
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.0e-08 64.7 211 23.7
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 2.6e-08 64.3 72 55.6
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.4e-08 63.9 59 59.3


User provided reference genes

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