Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 0.0e+00 1127.9 594 100.0
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 2.8e-287 991.5 582 86.4
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.2e-267 924.5 574 81.7
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 2.5e-259 898.7 570 81.9
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 8.2e-255 883.6 570 78.4
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.8e-252 874.8 570 80.2
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.0e-249 866.7 572 77.6
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 4.1e-246 854.7 569 76.3
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.3e-244 849.7 551 77.9
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 3.8e-244 848.2 593 73.5
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 3.8e-244 848.2 500 84.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 8.5e-244 847.0 564 75.2
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 2.5e-243 845.5 570 74.9
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 8.8e-241 837.0 570 74.2
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.7e-239 832.8 569 75.7
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 4.8e-239 831.2 570 74.0
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 9.1e-238 827.0 569 75.4
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 9.1e-238 827.0 570 74.2
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.6e-237 826.2 569 74.0
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.5e-236 820.8 569 73.3
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 8.5e-236 820.5 572 76.4
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.2e-235 818.5 570 73.7
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.5e-235 817.8 569 72.9
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 6.1e-234 814.3 570 75.8
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 6.1e-234 814.3 570 75.6
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-233 812.4 570 73.0
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-233 812.4 566 73.0
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 5.2e-233 811.2 574 73.5
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 5.2e-233 811.2 595 71.3
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.0e-232 809.3 552 74.1
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 2.6e-232 808.9 572 74.7
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 2.6e-232 808.9 569 72.8
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 4.4e-232 808.1 557 75.8
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.3e-231 806.6 569 75.0
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 3.7e-231 805.1 571 72.0
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 4.9e-231 804.7 569 74.9
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.4e-230 803.1 570 74.7
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-229 799.7 566 72.3
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 7.7e-229 797.3 498 78.9
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 6.6e-228 794.3 570 74.4
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.1e-227 793.5 558 75.4
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 2.5e-227 792.3 571 72.0
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 7.3e-227 790.8 570 72.1
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 7.3e-227 790.8 572 71.3
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 7.3e-227 790.8 573 74.5
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.6e-226 789.6 575 74.4
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.8e-226 788.9 575 74.3
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 8.0e-226 787.3 570 71.6
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.0e-225 786.9 571 70.4
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.4e-225 786.6 573 69.8
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.8e-225 786.2 572 69.8
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 4.0e-225 785.0 570 70.4
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 4.0e-225 785.0 504 77.0
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.0e-224 782.7 572 73.3
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 4.4e-224 781.6 572 73.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.4e-224 781.6 573 71.7
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 5.7e-224 781.2 574 70.4
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 1.3e-223 780.0 570 74.6
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.7e-223 779.6 574 70.4
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.2e-223 779.2 572 70.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.4e-222 776.5 571 67.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.2e-222 775.4 502 77.7
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 7.0e-222 774.2 502 77.7
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 7.0e-222 774.2 573 69.1
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 9.2e-222 773.9 569 69.6
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.0e-221 772.7 569 70.1
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.7e-220 769.6 570 69.5
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.7e-220 769.6 502 77.7
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 5.0e-220 768.1 502 76.7
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 4.3e-219 765.0 571 72.0
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 9.5e-219 763.8 572 69.6
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.0e-217 760.4 569 71.0
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 2.3e-217 759.2 572 68.5
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 5.2e-217 758.1 578 67.6
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 6.8e-217 757.7 582 68.9
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.2e-216 756.9 501 76.4
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 4.4e-216 755.0 570 68.6
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 5.8e-216 754.6 579 69.9
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.3e-215 753.4 502 75.3
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 4.9e-215 751.5 501 75.2
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 8.3e-215 750.7 573 68.4
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 3.2e-214 748.8 575 67.5
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.4e-214 748.0 570 70.7
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 7.0e-214 747.7 558 71.0
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 7.8e-213 744.2 504 73.8
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.3e-211 738.8 574 66.9
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.3e-211 737.6 576 66.5
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.6e-210 736.5 573 70.9
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 5.8e-208 728.0 580 67.1
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 2.9e-207 725.7 584 67.6
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.7e-207 725.3 583 69.0
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.4e-206 722.6 568 66.0
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 7.1e-206 721.1 583 69.1
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 9.2e-206 720.7 429 82.8
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 3.9e-204 715.3 568 65.7
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 1.6e-202 709.9 506 71.9
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.9e-199 698.4 586 63.7
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 2.4e-198 696.0 572 65.4
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.1e-198 695.3 586 62.5
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.3e-196 690.3 570 65.1
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.6e-196 687.6 558 64.5
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 3.3e-195 685.6 571 64.1
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 9.6e-195 684.1 576 64.6
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 3.6e-194 682.2 562 64.1
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 3.6e-194 682.2 504 67.9
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 8.1e-194 681.0 509 68.6
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 5.8e-192 674.9 502 69.3
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.7e-191 673.3 505 69.1
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.9e-190 669.8 579 59.8
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 7.1e-190 667.9 423 78.3
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.6e-189 666.8 507 68.6
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.5e-184 650.2 504 65.1
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.5e-179 633.6 502 67.9
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.5e-179 632.9 504 63.5
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 3.6e-178 629.0 502 61.2
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.8e-177 626.7 352 85.5
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 7.6e-176 621.3 507 62.5
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.0e-169 599.0 434 67.7
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.1e-163 580.9 383 72.6
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 6.3e-162 575.1 504 58.7
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.2e-146 523.5 488 61.5
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 5.5e-142 508.8 437 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 2.7e-141 506.5 454 55.1
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.2e-136 491.1 501 55.1
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 5.7e-131 472.2 450 60.2
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.5e-128 462.6 258 84.1
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 5.9e-128 462.2 501 53.7
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.7e-127 460.7 504 47.8
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 8.8e-124 448.4 519 44.5
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 3.7e-114 416.4 444 48.0
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-112 411.4 478 50.0
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.9e-98 363.6 302 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.3e-90 338.2 304 54.6
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 6.6e-87 325.9 470 39.4
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 2.8e-85 320.5 381 50.7
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 3.5e-72 276.9 412 39.3
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 3.0e-71 273.9 574 35.9
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.0e-67 261.2 235 60.4
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.2e-66 257.7 326 40.2
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 1.8e-39 168.3 167 59.3
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 3.9e-39 167.2 264 40.9
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.4e-36 157.9 555 24.9
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 7.7e-19 99.8 92 64.1
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 5.7e-14 83.6 53 79.2
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 9.1e-12 76.3 73 56.2


User provided reference genes

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