Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 5.6e-209 730.7 375 100.0
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.3e-141 506.9 345 78.6
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 4.2e-140 501.9 378 72.8
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.5e-140 501.5 345 77.4
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 6.3e-136 488.0 373 72.4
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 8.3e-136 487.6 383 68.4
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 3.9e-133 478.8 418 64.8
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.2e-131 473.8 379 70.7
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 3.6e-131 472.2 378 70.6
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 4.9e-128 461.8 381 67.7
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.1e-127 460.7 374 66.0
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 3.3e-124 449.1 383 66.6
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 2.1e-123 446.4 372 67.2
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.1e-123 446.4 391 65.0
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.8e-123 446.0 375 65.1
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.1e-122 444.1 390 63.3
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.4e-122 443.7 376 64.1
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 2.0e-121 439.9 368 66.6
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 4.4e-121 438.7 346 67.1
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 7.5e-121 438.0 347 68.6
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 4.9e-120 435.3 383 65.3
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.1e-119 434.1 363 65.8
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 2.1e-118 429.9 350 67.1
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 2.7e-118 429.5 350 67.1
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 4.6e-118 428.7 375 62.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 8.6e-117 424.5 380 62.4
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.3e-116 422.5 374 65.5
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.6e-116 421.8 351 65.2
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.1e-115 419.9 383 61.9
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 8.1e-115 417.9 363 65.3
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.2e-113 414.1 353 65.2
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.4e-113 412.1 373 61.7
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.7e-112 410.2 412 59.5
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 3.7e-112 409.1 340 65.3
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 4.9e-112 408.7 312 69.2
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.9e-111 406.8 260 78.1
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.4e-111 406.4 389 60.4
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 3.5e-110 402.5 357 61.1
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 3.5e-110 402.5 303 71.0
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.3e-109 400.6 288 71.9
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.7e-109 400.2 334 62.9
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.7e-109 400.2 334 62.9
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.7e-109 400.2 363 62.3
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 8.6e-109 397.9 341 63.0
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.5e-108 397.1 267 74.2
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.6e-108 395.2 266 74.1
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 5.6e-108 395.2 254 79.1
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 5.6e-108 395.2 344 64.8
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 9.6e-108 394.4 293 70.6
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.1e-107 393.3 293 70.6
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.1e-107 393.3 359 61.8
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 2.1e-107 393.3 363 60.1
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.8e-107 392.9 266 74.1
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.8e-107 392.9 252 79.4
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.2e-107 391.7 332 64.2
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.1e-106 391.0 363 62.0
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.4e-106 390.6 345 64.3
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-106 390.2 259 74.9
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.8e-106 390.2 323 65.0
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.1e-106 389.4 355 60.8
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 6.8e-106 388.3 311 66.6
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 6.8e-106 388.3 303 68.6
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.0e-105 386.7 350 60.6
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 4.4e-105 385.6 355 60.6
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 4.4e-105 385.6 355 62.0
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 5.8e-105 385.2 353 60.1
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 5.8e-105 385.2 353 60.1
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 7.6e-105 384.8 293 66.2
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.7e-104 383.6 281 71.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 2.2e-104 383.3 345 62.3
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.2e-104 383.3 255 74.1
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.2e-104 383.3 401 56.6
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 2.2e-104 383.3 401 56.6
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.9e-104 382.9 333 62.8
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 4.9e-104 382.1 252 77.4
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.9e-103 380.2 350 59.7
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 5.4e-103 378.6 287 69.7
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-102 377.5 256 72.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.2e-102 377.5 301 67.4
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.2e-102 377.5 352 61.9
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.6e-102 377.1 263 71.9
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 2.1e-102 376.7 350 60.9
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 3.5e-102 375.9 395 57.0
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.5e-102 375.9 285 70.5
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.5e-102 375.9 285 70.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.8e-102 374.8 379 58.3
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.3e-101 374.0 279 71.7
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.7e-101 373.6 348 60.3
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.5e-100 370.5 283 68.9
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 2.5e-100 369.8 254 72.8
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.5e-100 369.8 254 72.8
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 4.3e-100 369.0 241 75.1
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 5.6e-100 368.6 251 73.3
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 5.6e-100 368.6 251 73.3
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 7.3e-100 368.2 254 72.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 2.1e-99 366.7 311 62.7
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.8e-99 366.3 375 55.5
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 5.3e-98 362.1 278 67.6
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 4.4e-97 359.0 219 80.4
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 7.6e-97 358.2 201 89.6
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.7e-96 357.1 388 53.9
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 3.2e-95 352.8 351 58.1
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.2e-95 352.4 235 73.6
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 7.1e-95 351.7 216 79.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 9.3e-95 351.3 315 58.7
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.2e-94 350.9 388 53.1
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.3e-93 346.7 293 63.1
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.3e-92 342.4 286 67.5
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.8e-91 339.7 241 75.1
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.8e-89 332.0 253 65.6
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 4.2e-87 325.9 179 90.5
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.1e-85 318.9 284 58.1
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.7e-85 318.5 278 60.4
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 2.8e-83 313.2 316 57.6
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 3.1e-82 309.7 177 85.9
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.3e-80 304.3 322 51.2
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.3e-79 298.1 179 82.1
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.5e-76 290.0 194 78.9
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.7e-76 288.9 273 57.1
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 9.6e-76 288.1 316 55.4
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.6e-75 287.3 274 56.6
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.4e-74 284.3 277 57.8
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.0e-72 278.1 223 60.5
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.8e-67 260.0 161 80.7
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.5e-65 252.7 155 78.7
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 7.9e-62 241.9 377 45.6
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.8e-61 240.7 387 44.4
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.7e-59 234.2 195 65.6
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.1e-58 231.5 154 73.4
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.4e-53 214.5 226 47.8
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.1e-53 212.6 226 47.3
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 6.3e-51 205.7 130 78.5
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 8.2e-51 205.3 130 79.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 3.1e-50 203.4 130 78.5
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 3.1e-50 203.4 130 78.5
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 5.3e-50 202.6 130 78.5
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 5.3e-50 202.6 130 78.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 7.7e-49 198.7 359 42.1
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.4e-45 188.0 349 41.5
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 2.8e-43 180.3 112 76.8
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-42 177.9 112 75.9
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.6e-41 174.5 112 75.0
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 3.5e-41 173.3 254 40.2
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.2e-40 170.6 158 62.0
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-38 163.7 102 75.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.7e-38 163.7 102 75.5
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 4.7e-38 162.9 265 36.2
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 5.2e-37 159.5 102 80.4
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 5.2e-37 159.5 102 80.4
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 7.5e-36 155.6 102 78.4
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 4.1e-34 149.8 91 78.0
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 8.5e-32 142.1 192 52.1
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.6e-30 136.7 110 64.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.0e-29 133.7 112 62.5
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.0e-28 131.0 205 44.9
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.4e-28 129.8 143 55.2
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.3e-27 128.3 226 40.7
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.7e-27 126.7 99 63.6
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 6.6e-24 115.9 148 44.6
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 1.4e-21 108.2 152 44.7
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.5e-20 104.8 63 77.8
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 2.6e-20 104.0 80 68.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 9.8e-20 102.1 63 79.4
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 1.3e-19 101.7 87 59.8
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.2e-19 100.9 262 29.4
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.0e-13 82.0 72 61.1
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 8.9e-13 79.0 44 84.1
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 7.5e-12 75.9 68 57.4
Oeu044180.2 Olea europaea HOM05D060731 ORTHO05D049468 5.0e-08 63.2 159 38.4


User provided reference genes

Program Settings