Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 4.5e-135 484.6 240 100.0
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 6.1e-132 474.2 239 97.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.3e-86 323.6 216 77.8
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.4e-67 260.4 231 60.2
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.5e-53 213.8 221 52.0
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.5e-53 213.0 223 51.6
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.2e-50 204.1 231 51.1
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.9e-49 199.5 220 51.8
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 2.4e-48 196.4 222 50.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 7.1e-48 194.9 227 47.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.5e-45 187.2 218 47.7
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.6e-44 183.7 230 45.2
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.1e-43 181.0 241 44.0
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-43 179.9 138 68.1
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-43 179.9 138 68.1
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.9e-43 178.3 226 46.0
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 9.0e-43 177.9 218 44.0
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.2e-42 177.6 218 44.0
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.2e-42 177.6 224 45.1
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.2e-42 177.6 239 43.5
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.5e-42 177.2 240 42.9
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.5e-42 177.2 215 48.4
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.0e-42 176.8 216 45.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.6e-42 176.4 215 46.0
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.7e-41 173.7 231 42.4
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.7e-41 173.7 218 45.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 3.8e-41 172.6 223 45.7
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-40 171.0 97 85.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.2e-40 169.5 227 43.6
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 3.2e-40 169.5 236 40.7
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 3.2e-40 169.5 233 45.1
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.1e-39 166.8 290 37.6
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.7e-39 166.4 219 47.5
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 3.5e-39 166.0 217 41.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.3e-38 164.1 217 41.5
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.0e-38 162.9 218 45.0
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 6.7e-38 161.8 232 42.2
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 8.7e-38 161.4 220 45.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.7e-38 161.4 218 45.0
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-37 161.0 219 44.7
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 7.4e-37 158.3 230 40.4
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.3e-36 157.5 224 40.2
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.3e-36 157.5 224 43.8
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 2.8e-36 156.4 199 45.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 2.8e-36 156.4 199 45.7
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 2.8e-36 156.4 223 40.4
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.7e-36 156.0 187 47.6
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.1e-35 154.5 217 45.2
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 4.0e-35 152.5 225 44.0
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 5.3e-35 152.1 165 49.1
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 6.9e-35 151.8 237 38.4
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 9.0e-35 151.4 217 44.2
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.5e-34 150.6 213 42.3
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.0e-34 150.2 257 39.3
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 4.5e-34 149.1 217 42.9
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 5.8e-34 148.7 214 41.6
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.7e-33 147.1 223 39.9
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.7e-33 147.1 241 37.3
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.2e-33 146.7 223 39.9
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.2e-33 146.7 223 39.9
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.9e-33 145.6 234 37.6
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.5e-33 145.2 214 40.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.5e-33 145.2 214 40.2
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.4e-33 144.8 214 40.7
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 8.4e-33 144.8 214 40.7
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.1e-32 144.4 224 41.1
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-32 144.1 220 42.3
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.4e-32 144.1 222 39.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-32 144.1 214 41.1
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.9e-32 143.7 223 39.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.5e-32 143.3 241 37.8
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.5e-32 142.1 214 41.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.2e-31 141.0 214 38.3
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.6e-31 140.6 225 41.8
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 2.7e-31 139.8 214 39.3
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-31 139.8 89 74.2
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 3.5e-31 139.4 217 40.6
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.6e-31 139.0 214 39.7
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 4.6e-31 139.0 234 38.0
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 4.6e-31 139.0 235 37.9
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 6.0e-31 138.7 209 40.2
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.9e-31 138.3 247 39.7
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-30 137.9 219 40.6
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 2.3e-30 136.7 184 43.5
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 8.7e-30 134.8 215 39.1
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.1e-29 134.4 246 38.2
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 3.3e-29 132.9 233 38.6
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.7e-29 131.3 216 38.9
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.3e-28 131.0 218 38.1
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.3e-28 131.0 216 38.4
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.3e-28 131.0 181 44.8
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.2e-28 130.2 190 42.6
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.2e-28 130.2 164 45.7
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.8e-28 129.8 216 38.4
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.8e-27 127.1 215 39.5
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.1e-27 126.3 216 38.4
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.5e-26 124.0 220 37.7
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.5e-26 124.0 238 35.3
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.0e-26 123.6 221 37.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 5.9e-26 122.1 213 39.9
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.0e-25 121.3 219 34.7
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.7e-25 120.6 220 36.8
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.0e-25 119.0 223 38.1
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.4e-24 117.5 210 37.6
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.4e-24 117.5 210 37.6
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.4e-24 117.5 235 33.2
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.9e-24 117.1 215 38.1
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.2e-24 116.3 225 37.8
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 9.3e-24 114.8 210 38.1
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.2e-23 114.4 210 37.1
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-23 114.0 205 36.6
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 4.6e-23 112.5 223 35.0
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 7.9e-23 111.7 160 44.4
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.7e-22 108.6 177 41.8
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 7.4e-21 105.1 209 34.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 9.7e-21 104.8 358 26.5
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-20 104.0 162 42.6
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.4e-19 100.9 136 44.9
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.5e-18 97.4 186 38.2
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 4.5e-18 95.9 236 32.2
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.8e-17 92.8 164 36.6
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 5.0e-17 92.4 157 39.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.5e-16 90.1 218 31.7
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 7.2e-16 88.6 175 35.4
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 2.1e-15 87.0 212 32.1
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 9.7e-13 78.2 136 37.5
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.8e-12 75.9 86 51.2
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-11 74.7 156 31.4
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 4.1e-11 72.8 116 37.9
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.5e-10 70.9 152 34.9
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-10 69.7 68 51.5
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-09 67.0 69 49.3
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 2.2e-09 67.0 89 38.2
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.1e-08 64.7 176 27.8
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-08 64.7 69 46.4
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-08 64.3 78 44.9


User provided reference genes

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