Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34485 Davidia involucrata HOM05D003400 ORTHO05D003687 3.0e-31 137.9 69 100.0
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 8.9e-20 99.8 69 76.8
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 3.4e-19 97.8 69 76.8
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.4e-17 92.4 69 71.0
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 4.2e-17 90.9 69 71.0
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.2e-17 90.9 69 71.0
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.1e-16 88.6 69 65.2
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.7e-16 88.2 69 68.1
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 3.5e-16 87.8 67 73.1
CSS0009268 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 4.6e-16 87.4 69 68.1
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 1.3e-15 85.9 67 68.7
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 1.7e-15 85.5 67 71.6
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 1.7e-15 85.5 67 71.6
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.3e-15 85.1 69 62.3
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 8.7e-15 83.2 69 66.7
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.1e-14 82.8 64 68.8
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 3.3e-14 81.3 69 65.2
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 4.3e-14 80.9 69 65.2
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 5.6e-14 80.5 67 64.2
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 5.6e-14 80.5 69 63.8
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 5.6e-14 80.5 69 63.8
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 7.3e-14 80.1 69 63.8
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 7.3e-14 80.1 67 59.7
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 9.6e-14 79.7 67 62.7
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 2.1e-13 78.6 69 62.3
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.1e-13 78.6 69 63.8
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 2.8e-13 78.2 69 63.8
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 3.6e-13 77.8 67 62.7
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 3.6e-13 77.8 70 62.9
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 6.2e-13 77.0 69 63.8
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 1.1e-12 76.3 69 62.3
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 1.4e-12 75.9 67 61.2
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 1.4e-12 75.9 67 62.7
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 3.1e-12 74.7 62 62.9
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.0e-12 74.3 69 62.3
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 5.3e-12 73.9 58 65.5
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 6.9e-12 73.6 69 59.4
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 9.0e-12 73.2 70 55.7
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 9.0e-12 73.2 70 55.7
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.2e-11 72.8 69 60.9
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.2e-11 72.8 69 59.4
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 1.5e-11 72.4 69 56.5
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 1.5e-11 72.4 67 64.2
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 1.5e-11 72.4 58 63.8
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 2.6e-11 71.6 58 63.8
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 3.4e-11 71.2 67 58.2
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 3.4e-11 71.2 67 52.2
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 3.4e-11 71.2 67 52.2
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 4.5e-11 70.9 67 52.2
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.5e-11 70.9 67 52.2
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 5.8e-11 70.5 67 58.2
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 5.8e-11 70.5 69 58.0
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.8e-11 70.5 67 52.2
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 7.6e-11 70.1 69 59.4
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 9.9e-11 69.7 67 53.7
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.3e-10 69.3 67 53.7
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.3e-10 69.3 67 53.7
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.3e-10 69.3 58 62.1
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 1.7e-10 68.9 67 53.7
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.7e-10 68.9 67 61.2
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.7e-10 68.9 67 58.2
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 1.7e-10 68.9 67 58.2
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 1.7e-10 68.9 68 57.4
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 2.2e-10 68.6 69 58.0
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 2.9e-10 68.2 69 58.0
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 2.9e-10 68.2 58 62.1
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 2.9e-10 68.2 69 56.5
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 2.9e-10 68.2 69 56.5
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 2.9e-10 68.2 69 58.0
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 3.8e-10 67.8 67 52.2
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 4.9e-10 67.4 58 60.3
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 4.9e-10 67.4 58 63.8
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 4.9e-10 67.4 69 56.5
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 4.9e-10 67.4 67 49.3
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 6.4e-10 67.0 69 56.5
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 8.4e-10 66.6 58 60.3
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 8.4e-10 66.6 69 52.2
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.4e-09 65.9 69 55.1
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.4e-09 65.9 67 55.2
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 1.9e-09 65.5 67 53.7
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 3.2e-09 64.7 67 53.7
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 3.2e-09 64.7 67 53.7
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 3.2e-09 64.7 57 59.6
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 4.2e-09 64.3 66 57.6
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 5.4e-09 63.9 67 59.7
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.7e-08 61.6 69 55.1
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 4.6e-08 60.8 58 58.6
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 4.6e-08 60.8 58 58.6
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.0e-07 59.7 69 52.2
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 3.0e-07 58.2 69 52.2
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 3.9e-07 57.8 59 57.6
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.9e-07 57.8 67 50.7
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 5.1e-07 57.4 67 53.7
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 5.1e-07 57.4 67 53.7
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 6.7e-07 57.0 69 50.7
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 8.7e-07 56.6 67 53.7
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 8.7e-07 56.6 67 53.7
Oeu006055.1 Olea europaea HOM05D003400 ORTHO05D003687 8.7e-07 56.6 46 71.7
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 8.7e-07 56.6 65 55.4
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 1.5e-06 55.8 67 53.7
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.9e-06 55.5 64 50.0
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.9e-06 55.5 64 50.0
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 2.5e-06 55.1 67 49.3
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 3.3e-06 54.7 64 50.0
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 4.3e-06 54.3 70 51.4
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 5.6e-06 53.9 70 55.7
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 7.4e-06 53.5 67 50.7
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 7.4e-06 53.5 67 52.2
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 9.6e-06 53.1 63 47.6
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 9.6e-06 53.1 67 49.3
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 9.6e-06 53.1 67 49.3


User provided reference genes

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