Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.7e-55 218.4 109 100.0
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.7e-23 111.3 80 65.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.7e-23 111.3 80 65.0
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.2e-22 107.8 77 59.7
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.5e-21 104.0 75 64.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 6.3e-20 100.9 73 63.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-19 99.0 79 62.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 5.4e-19 97.8 79 55.7
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.4e-19 97.8 80 58.8
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 7.0e-19 97.4 77 55.8
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.3e-17 93.2 82 59.8
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.9e-17 92.0 81 59.3
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 3.8e-17 91.7 86 54.7
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.0e-17 91.3 78 53.8
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.5e-16 89.0 80 53.8
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 2.5e-16 89.0 84 57.1
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 4.3e-16 88.2 78 47.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 9.5e-16 87.0 78 47.4
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.2e-15 86.7 78 46.2
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-15 86.7 78 48.7
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.1e-15 85.9 78 47.4
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.8e-15 85.5 69 50.7
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.8e-15 85.5 83 50.6
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.8e-15 85.5 77 49.4
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.8e-15 85.5 68 54.4
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 6.1e-15 84.3 68 52.9
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 6.1e-15 84.3 78 57.7
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.0e-15 84.0 69 49.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-14 83.6 79 45.6
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.0e-14 83.6 69 49.3
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.4e-14 83.2 83 55.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.4e-14 83.2 69 49.3
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.4e-14 83.2 74 52.7
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.4e-14 83.2 71 54.9
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.4e-14 83.2 79 50.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.8e-14 82.8 80 51.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.3e-14 82.4 76 53.9
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.0e-14 82.0 77 50.6
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.0e-14 82.0 77 50.6
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.0e-14 82.0 83 47.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 3.0e-14 82.0 79 53.2
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.0e-14 81.6 69 47.8
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 4.0e-14 81.6 76 46.1
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 6.8e-14 80.9 80 47.5
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.9e-14 80.5 76 51.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.9e-14 80.5 76 51.3
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.2e-13 80.1 81 46.9
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.2e-13 80.1 76 51.3
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.2e-13 80.1 77 45.5
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-13 79.3 78 44.9
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.0e-13 79.3 78 42.3
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 4.4e-13 78.2 70 48.6
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 5.8e-13 77.8 81 53.1
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 5.8e-13 77.8 78 51.3
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 5.8e-13 77.8 79 48.1
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 5.8e-13 77.8 79 48.1
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 5.8e-13 77.8 70 52.9
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 5.8e-13 77.8 80 50.0
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 7.5e-13 77.4 70 47.1
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 9.8e-13 77.0 69 52.2
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.3e-12 76.6 68 51.5
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.3e-12 76.6 77 44.2
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.7e-12 76.3 51 60.8
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.9e-12 75.5 82 45.1
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.9e-12 75.5 78 47.4
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.7e-12 75.1 56 53.6
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.7e-12 75.1 56 53.6
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.7e-12 75.1 70 47.1
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.7e-12 75.1 77 45.5
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.9e-12 74.7 81 43.2
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 6.4e-12 74.3 82 48.8
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 6.4e-12 74.3 78 46.2
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.3e-12 73.9 78 43.6
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 8.3e-12 73.9 79 46.8
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.1e-11 73.6 79 43.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-11 73.2 83 48.2
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-11 73.2 82 48.8
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 1.4e-11 73.2 77 48.1
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.9e-11 72.8 79 43.0
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.9e-11 72.8 81 50.6
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.4e-11 72.4 72 45.8
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 4.1e-11 71.6 79 44.3
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 4.1e-11 71.6 79 49.4
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 4.1e-11 71.6 77 45.5
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 5.4e-11 71.2 69 44.9
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 5.4e-11 71.2 84 45.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.4e-11 71.2 97 40.2
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.2e-10 70.1 77 40.3
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.0e-10 69.3 77 45.5
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 2.0e-10 69.3 74 45.9
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 2.7e-10 68.9 73 42.5
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 2.7e-10 68.9 76 43.4
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 3.5e-10 68.6 73 46.6
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 4.6e-10 68.2 65 47.7
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.8e-10 67.4 77 42.9
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.0e-09 67.0 77 42.9
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.0e-09 65.5 77 41.6
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.9e-09 65.1 72 43.1
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 6.6e-09 64.3 72 47.2
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-09 63.9 39 56.4
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 1.9e-08 62.8 110 34.5
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 1.9e-08 62.8 83 44.6
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 1.9e-08 62.8 103 35.0
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 1.9e-08 62.8 103 35.0
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.5e-08 62.4 79 46.8
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.3e-08 62.0 80 41.2
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 5.6e-08 61.2 87 41.4
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 9.5e-08 60.5 78 43.6
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.6e-07 59.7 77 39.0
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 2.1e-07 59.3 89 39.3
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.1e-06 57.0 38 55.3
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 2.3e-06 55.8 38 55.3
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 3.1e-06 55.5 72 38.9
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 6.8e-06 54.3 71 36.6
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 6.8e-06 54.3 35 54.3


User provided reference genes

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