Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34427 Davidia involucrata HOM05D003256 ORTHO05D005659 1.7e-137 492.7 246 100.0
Haze_17178 Corylus avellana HOM05D003256 ORTHO05D005659 1.5e-85 320.1 302 58.9
Peaxi162Scf00957g00328 Petunia axillaris HOM05D003256 ORTHO05D005659 1.5e-85 320.1 291 60.5
Duzib106G0685 Durio zibethinus HOM05D003256 ORTHO05D005659 2.0e-85 319.7 302 59.3
Duzib114G1030 Durio zibethinus HOM05D003256 ORTHO05D005659 5.7e-85 318.2 302 58.6
Actinidia00932 Actinidia chinensis HOM05D003256 ORTHO05D005659 8.2e-84 314.3 284 62.3
Cfa001372 Carpinus fangiana HOM05D003256 ORTHO05D005659 1.8e-83 313.2 302 57.9
Nitab4.5_0002100g0150 Nicotiana tabacum HOM05D003256 ORTHO05D005659 3.1e-83 312.4 303 58.1
GSVIVG01016373001 Vitis vinifera HOM05D003256 ORTHO05D005659 3.1e-83 312.4 303 58.1
TWI73G0749 Tripterygium wilfordii HOM05D003256 ORTHO05D005659 4.1e-83 312.0 303 58.4
CiPaw.01G295400 Carya illinoinensis HOM05D003256 ORTHO05D005659 9.1e-83 310.8 303 58.4
Dinv20951 Davidia involucrata HOM05D003256 ORTHO05D005659 9.1e-83 310.8 308 57.5
Dinv20992 Davidia involucrata HOM05D003256 ORTHO05D005659 9.1e-83 310.8 308 57.5
Thecc.10G027000 Theobroma cacao HOM05D003256 ORTHO05D005659 1.6e-82 310.1 302 57.9
Nitab4.5_0000369g0010 Nicotiana tabacum HOM05D003256 ORTHO05D005659 2.0e-82 309.7 303 57.4
Gohir.D10G243000 Gossypium hirsutum HOM05D003256 ORTHO05D005659 1.3e-81 307.0 303 57.4
Gorai.011G279400 Gossypium raimondii HOM05D003256 ORTHO05D005659 1.3e-81 307.0 303 57.4
FAN03G3417 Fragaria x ananassa HOM05D003256 ORTHO05D005659 1.7e-81 306.6 302 57.0
Lsat_1_v5_gn_2_122641 Lactuca sativa HOM05D003256 ORTHO05D005659 1.7e-81 306.6 303 56.4
FAN01G1344 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.2e-81 306.2 302 56.6
Lj1C950T1 Lonicera japonica HOM05D003256 ORTHO05D005659 2.2e-81 306.2 304 58.6
Peaxi162Scf00401g00023 Petunia axillaris HOM05D003256 ORTHO05D005659 2.9e-81 305.8 302 57.3
CANSAT80G0910 Cannabis sativa HOM05D003256 ORTHO05D005659 3.8e-81 305.4 302 56.3
FvH4_7g23960 Fragaria vesca HOM05D003256 ORTHO05D005659 3.8e-81 305.4 302 56.6
FAN06G1448 Fragaria x ananassa HOM05D003256 ORTHO05D005659 3.8e-81 305.4 302 56.6
Gohir.A10G229000 Gossypium hirsutum HOM05D003256 ORTHO05D005659 1.9e-80 303.1 303 56.8
HanXRQChr14g0459921 Helianthus annuus HOM05D003256 ORTHO05D005659 2.5e-80 302.8 302 55.6
Potri.010G193300 Populus trichocarpa HOM05D003256 ORTHO05D005659 2.5e-80 302.8 302 57.3
TAR623G1127 Trochodendron aralioides HOM05D003256 ORTHO05D005659 2.5e-80 302.8 303 58.4
Actinidia13915 Actinidia chinensis HOM05D003256 ORTHO05D005659 5.5e-80 301.6 310 56.8
RcHm_v2.0_Chr1g0369301 Rosa chinensis HOM05D003256 ORTHO05D005659 5.5e-80 301.6 302 56.3
Cpa.g.sc19.221 Carica papaya HOM05D003256 ORTHO05D005659 7.2e-80 301.2 305 56.7
Sopen05g031130 Solanum pennellii HOM05D003256 ORTHO05D005659 9.4e-80 300.8 304 56.9
Cc02_g06960 Coffea canephora HOM05D003256 ORTHO05D005659 1.2e-79 300.4 303 57.8
Atru.chr12.249 Acer truncatum HOM05D003256 ORTHO05D005659 1.6e-79 300.1 304 57.2
Manes.07G124800 Manihot esculenta HOM05D003256 ORTHO05D005659 2.7e-79 299.3 302 56.0
Ciclev10031765m.g Citrus clementina HOM05D003256 ORTHO05D005659 8.0e-79 297.7 302 55.0
CAN.G1158.6 Capsicum annuum HOM05D003256 ORTHO05D005659 1.4e-78 297.0 304 56.2
PGSC0003DMG400027125 Solanum tuberosum HOM05D003256 ORTHO05D005659 1.4e-78 297.0 305 56.7
CSS0032234 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 6.8e-78 294.7 304 57.9
CSS0038881 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 6.8e-78 294.7 304 57.9
Migut.F01436 Erythranthe guttata HOM05D003256 ORTHO05D005659 8.8e-78 294.3 304 56.2
Sabra08G0047000 Salix brachista HOM05D003256 ORTHO05D005659 1.5e-77 293.5 302 54.6
Oeu006655.1 Olea europaea HOM05D003256 ORTHO05D005659 2.6e-77 292.7 302 55.6
Aqoxy1G00711 Aquilegia oxysepala HOM05D003256 ORTHO05D005659 3.4e-77 292.4 302 56.0
Nitab4.5_0015171g0010 Nicotiana tabacum HOM05D003256 ORTHO05D005659 3.4e-77 292.4 304 55.3
Eucgr.J00242 Eucalyptus grandis HOM05D003256 ORTHO05D005659 5.7e-77 291.6 303 55.4
Manes.10G018100 Manihot esculenta HOM05D003256 ORTHO05D005659 5.7e-77 291.6 302 55.3
Nitab4.5_0000278g0170 Nicotiana tabacum HOM05D003256 ORTHO05D005659 2.2e-76 289.7 304 54.6
MSTRG.8307 Avicennia marina HOM05D003256 ORTHO05D005659 2.8e-76 289.3 303 55.4
FAN21G0309 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.8e-76 289.3 304 54.9
Glyma.18G030400 Glycine max HOM05D003256 ORTHO05D005659 3.7e-76 288.9 302 55.6
Glyma.11G226900 Glycine max HOM05D003256 ORTHO05D005659 6.3e-76 288.1 302 55.3
CSS0038355 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 1.1e-75 287.3 302 54.3
CSS0041794 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 1.1e-75 287.3 302 54.3
ClCG07G003920 Citrullus lanatus HOM05D003256 ORTHO05D005659 3.1e-75 285.8 303 54.5
DCAR_011785 Daucus carota HOM05D003256 ORTHO05D005659 3.1e-75 285.8 302 55.6
CsaV3_5G008880 Cucumis sativus L. HOM05D003256 ORTHO05D005659 5.4e-75 285.0 303 54.5
VMungo1383G2733 Vigna mungo HOM05D003256 ORTHO05D005659 7.0e-75 284.6 302 55.0
vmacro10065 Vaccinium macrocarpon HOM05D003256 ORTHO05D005659 1.6e-74 283.5 300 54.7
ECA238G0506 Erigeron canadensis HOM05D003256 ORTHO05D005659 2.7e-74 282.7 302 54.3
FvH4_3g15380 Fragaria vesca HOM05D003256 ORTHO05D005659 2.7e-74 282.7 303 53.5
FAN16G1030 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.7e-74 282.7 304 53.3
FAN25G2279 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.7e-74 282.7 304 53.3
FAN11G2434 Fragaria x ananassa HOM05D003256 ORTHO05D005659 5.9e-74 281.6 303 53.1
Oeu038996.2 Olea europaea HOM05D003256 ORTHO05D005659 5.9e-74 281.6 322 53.4
PGR142G2386 Punica granatum HOM05D003256 ORTHO05D005659 5.9e-74 281.6 304 54.9
Rhsim09G0171900 Rhododendron simsii HOM05D003256 ORTHO05D005659 5.9e-74 281.6 300 54.0
SalBow6G0602 Salvia bowleyana HOM05D003256 ORTHO05D005659 7.7e-74 281.2 306 53.6
RcHm_v2.0_Chr5g0025831 Rosa chinensis HOM05D003256 ORTHO05D005659 1.3e-73 280.4 303 53.1
Prupe.4G136700 Prunus persica HOM05D003256 ORTHO05D005659 2.9e-73 279.3 303 53.1
Sed0004122 Sechium edule HOM05D003256 ORTHO05D005659 2.9e-73 279.3 303 53.8
MELO3C025149.2 Cucumis melo HOM05D003256 ORTHO05D005659 3.8e-73 278.9 315 52.7
Phvul.001G240200 Phaseolus vulgaris HOM05D003256 ORTHO05D005659 3.8e-73 278.9 302 54.0
Lalb_Chr15g0084341 Lupinus albus HOM05D003256 ORTHO05D005659 8.5e-73 277.7 303 52.8
BcaB02g08398 Brassica carinata HOM05D003256 ORTHO05D005659 3.2e-72 275.8 304 52.6
MD05G1223500 Malus domestica HOM05D003256 ORTHO05D005659 3.2e-72 275.8 304 52.6
CDE04G0991 Ceratophyllum demersum HOM05D003256 ORTHO05D005659 5.5e-72 275.0 304 53.9
AL5G37090 Arabidopsis lyrata HOM05D003256 ORTHO05D005659 7.2e-72 274.6 304 53.0
Ca_17142_v3 Cicer arietinum L. HOM05D003256 ORTHO05D005659 9.4e-72 274.2 302 52.3
AT3G55800 Arabidopsis thaliana HOM05D003256 ORTHO05D005659 2.1e-71 273.1 304 52.6
HanXRQChr07g0202701 Helianthus annuus HOM05D003256 ORTHO05D005659 2.1e-71 273.1 303 51.8
COL.COLO4_25669 Corchorus olitorius HOM05D003256 ORTHO05D005659 4.7e-71 271.9 303 52.5
SalBow6G6740 Salvia bowleyana HOM05D003256 ORTHO05D005659 4.7e-71 271.9 306 52.6
A04p04210 Brassica napus HOM05D003256 ORTHO05D005659 6.1e-71 271.6 305 52.5
BraA04t16137Z Brassica rapa HOM05D003256 ORTHO05D005659 6.1e-71 271.6 305 52.5
BcaC02g09791 Brassica carinata HOM05D003256 ORTHO05D005659 8.0e-71 271.2 305 52.5
MD01G1146300 Malus domestica HOM05D003256 ORTHO05D005659 1.4e-70 270.4 306 52.9
C04p36570 Brassica napus HOM05D003256 ORTHO05D005659 3.0e-70 269.2 305 52.1
Carub.0005s2258 Capsella rubella HOM05D003256 ORTHO05D005659 3.0e-70 269.2 304 52.3
A09p48800 Brassica napus HOM05D003256 ORTHO05D005659 4.0e-70 268.9 304 51.3
BraA09t40333Z Brassica rapa HOM05D003256 ORTHO05D005659 4.0e-70 268.9 304 51.3
Psat5g127280 Pisum sativum HOM05D003256 ORTHO05D005659 4.0e-70 268.9 302 52.0
Sp5g06680 Schrenkiella parvula HOM05D003256 ORTHO05D005659 4.0e-70 268.9 306 52.3
AUR62012202 Chenopodium quinoa HOM05D003256 ORTHO05D005659 5.2e-70 268.5 303 52.1
AUR62022835 Chenopodium quinoa HOM05D003256 ORTHO05D005659 5.2e-70 268.5 303 52.1
CDE02G1261 Ceratophyllum demersum HOM05D003256 ORTHO05D005659 6.8e-70 268.1 304 52.3
BolC4t25140H Brassica oleracea HOM05D003256 ORTHO05D005659 1.2e-69 267.3 306 51.6
EL10Ac2g04782 Beta vulgaris HOM05D003256 ORTHO05D005659 1.5e-69 266.9 302 52.3
Hund13828 Selenicereus undatus HOM05D003256 ORTHO05D005659 1.5e-69 266.9 304 51.6
BcaB01g00060 Brassica carinata HOM05D003256 ORTHO05D005659 2.0e-69 266.5 305 51.5
Medtr3g070100 Medicago truncatula HOM05D003256 ORTHO05D005659 2.0e-69 266.5 302 51.3
THA.LOC104824303 Tarenaya hassleriana HOM05D003256 ORTHO05D005659 2.6e-69 266.2 311 51.1
TPR.G29802 Trifolium pratense HOM05D003256 ORTHO05D005659 2.6e-69 266.2 302 50.7
C08p31130 Brassica napus HOM05D003256 ORTHO05D005659 3.4e-69 265.8 305 51.5
Aa31LG10G10780 Aethionema arabicum HOM05D003256 ORTHO05D005659 1.7e-68 263.5 305 51.1
Thhalv10010434m.g Eutrema salsugineum HOM05D003256 ORTHO05D005659 2.8e-68 262.7 305 52.1
MD07G1213200 Malus domestica HOM05D003256 ORTHO05D005659 2.8e-68 262.7 310 51.3
BolC8t50734H Brassica oleracea HOM05D003256 ORTHO05D005659 3.7e-68 262.3 306 50.7
Ah.16g103070 Amaranthus hybridus HOM05D003256 ORTHO05D005659 6.3e-68 261.5 289 52.6
CARHR165910 Cardamine hirsuta HOM05D003256 ORTHO05D005659 8.3e-68 261.2 305 51.5
A07p22680 Brassica napus HOM05D003256 ORTHO05D005659 2.4e-67 259.6 305 51.1
BraA07t29936Z Brassica rapa HOM05D003256 ORTHO05D005659 4.1e-67 258.8 306 50.7
Potri.008G063800 Populus trichocarpa HOM05D003256 ORTHO05D005659 9.2e-67 257.7 264 54.2
Sed0001843 Sechium edule HOM05D003256 ORTHO05D005659 2.7e-66 256.1 305 51.5
PSO801G0459 Papaver somniferum HOM05D003256 ORTHO05D005659 5.9e-66 255.0 305 51.1
BolC6t37492H Brassica oleracea HOM05D003256 ORTHO05D005659 1.3e-65 253.8 297 51.2
PSO339G4197 Papaver somniferum HOM05D003256 ORTHO05D005659 2.3e-65 253.1 305 50.8
arahy.Tifrunner.gnm1.ann1.EZF9IN Arachis hypogaea HOM05D003256 ORTHO05D005659 5.0e-65 251.9 304 50.7
ATR0564G033 Amborella trichopoda HOM05D003256 ORTHO05D005659 8.6e-65 251.1 306 49.3
Prupe.2G245700 Prunus persica HOM05D003256 ORTHO05D005659 8.6e-65 251.1 278 52.9
arahy.Tifrunner.gnm1.ann1.M6YT3U Arachis hypogaea HOM05D003256 ORTHO05D005659 3.3e-64 249.2 304 50.3
MBI05_g03456_MAGBIO Magnolia biondii HOM05D003256 ORTHO05D005659 9.5e-64 247.7 270 53.3
unitig_62.g23937 Utricularia gibba HOM05D003256 ORTHO05D005659 6.1e-63 245.0 316 47.8
Zm00001eb147750 Zea mays HOM05D003256 ORTHO05D005659 8.9e-62 241.1 162 72.8
Os04g0234600 Oryza sativa ssp. japonica HOM05D003256 ORTHO05D005659 1.5e-61 240.4 162 72.2
unitig_52.g16837 Utricularia gibba HOM05D003256 ORTHO05D005659 4.4e-61 238.8 300 49.0
HPP92_015300 Vanilla planifolia HOM05D003256 ORTHO05D005659 1.0e-57 227.6 268 50.0
Sc11g0007310 Simmondsia chinensis HOM05D003256 ORTHO05D005659 3.0e-57 226.1 162 68.5
AagrBONN_evm.TU.Sc2ySwM_362.1456 Anthoceros agrestis HOM05D003256 ORTHO05D005659 1.1e-56 224.2 162 67.9
Lj6g0015506 Lotus japonicus HOM05D003256 ORTHO05D005659 1.1e-56 224.2 162 68.5
SMO146G0041 Selaginella moellendorffii HOM05D003256 ORTHO05D005659 1.5e-56 223.8 162 67.3
HPP92_015335 Vanilla planifolia HOM05D003256 ORTHO05D005659 3.3e-56 222.6 268 48.9
Mapoly0024s0048 Marchantia polymorpha HOM05D003256 ORTHO05D005659 1.6e-55 220.3 162 66.7
CBR_g48544 Chara braunii HOM05D003256 ORTHO05D005659 2.3e-54 216.5 162 65.4
SGA_v2.0_scaffold343G49450 Striga asiatica HOM05D003256 ORTHO05D005659 3.4e-53 212.6 303 44.9
Pp3c6_22140 Physcomitrium patens HOM05D003256 ORTHO05D005659 4.6e-50 202.2 162 63.0
Pp3c5_5150 Physcomitrium patens HOM05D003256 ORTHO05D005659 1.7e-49 200.3 162 63.0
Nn2g11368 Nelumbo nucifera HOM05D003256 ORTHO05D005659 6.6e-49 198.4 303 45.2
BcaC08g44752 Brassica carinata HOM05D003256 ORTHO05D005659 1.1e-48 197.6 276 45.3
Cre03.g185550 Chlamydomonas reinhardtii HOM05D003256 ORTHO05D005659 1.9e-48 196.8 162 61.7
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 7.3e-48 194.9 168 60.1
C06p23180 Brassica napus HOM05D003256 ORTHO05D005659 2.7e-42 176.4 234 47.9
MD10G1205000 Malus domestica HOM05D003256 ORTHO05D005659 6.0e-42 175.3 208 51.0
BcaB02g07674 Brassica carinata HOM05D003256 ORTHO05D005659 7.8e-26 121.7 107 59.8
CARHR292640 Cardamine hirsuta HOM05D003256 ORTHO05D005659 1.0e-25 121.3 140 49.3
MD10G1204900 Malus domestica HOM05D003256 ORTHO05D005659 1.6e-23 114.0 63 79.4
Solyc05g052600.4 Solanum lycopersicum HOM05D003256 ORTHO05D005659 6.2e-23 112.1 165 46.7
Pp3c16_15970 Physcomitrium patens HOM05D003256 ORTHO05D005659 1.3e-20 104.4 70 67.1
PRCOL_00004449 Prasinoderma coloniale HOM05D003256 ORTHO05D005659 1.9e-16 90.5 169 34.9
MCO15G625 Micromonas commoda HOM05D003256 ORTHO05D005659 5.3e-14 82.4 158 32.9
Cre17.g699600 Chlamydomonas reinhardtii HOM05D003256 ORTHO05D005659 8.4e-12 75.1 213 29.1


User provided reference genes

Program Settings