Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 0.0e+00 1326.6 710 100.0
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 5.0e-307 1057.4 715 82.0
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 5.0e-307 1057.4 715 82.0
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 8.9e-256 887.1 720 70.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 9.5e-242 840.5 699 68.5
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 8.7e-227 790.8 743 62.3
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 2.9e-222 775.8 699 62.1
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.1e-221 773.9 703 61.9
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.4e-221 773.5 659 64.3
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 3.2e-221 772.3 699 63.1
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.2e-220 770.4 701 61.3
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 7.4e-218 761.1 700 61.6
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.0e-216 755.4 700 63.4
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.9e-214 749.2 699 62.7
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 6.4e-214 748.0 721 60.3
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.6e-212 743.4 703 61.2
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.5e-212 742.3 703 60.6
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.6e-212 741.9 703 60.6
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.1e-211 738.4 659 62.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 6.7e-211 738.0 653 64.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 9.6e-210 734.2 700 61.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.6e-209 733.4 716 60.1
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.6e-209 733.4 727 59.0
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.6e-209 733.4 717 61.8
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 2.8e-209 732.6 664 61.3
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.7e-209 732.3 721 58.4
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.2e-209 731.5 664 60.8
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 6.2e-209 731.5 705 61.3
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.9e-206 721.8 743 56.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 9.3e-205 717.6 713 59.0
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 7.9e-204 714.5 694 60.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.3e-203 713.8 705 59.7
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.9e-203 712.2 718 59.3
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.3e-202 708.8 718 58.5
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.8e-201 705.3 694 59.1
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 8.2e-201 704.5 694 58.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.4e-200 703.7 694 58.9
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 6.9e-200 701.4 697 58.4
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 6.9e-200 701.4 659 60.4
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.5e-199 700.3 714 56.7
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 2.0e-199 699.9 695 61.6
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.8e-198 695.7 690 59.1
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.4e-192 677.2 715 56.4
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.1e-192 675.6 692 56.9
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.6e-191 672.9 683 58.0
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 5.9e-191 671.8 688 58.1
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 7.7e-191 671.4 642 59.8
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.4e-189 667.2 683 56.8
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.5e-189 666.4 691 56.2
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 9.4e-189 664.5 702 55.7
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 4.6e-188 662.1 649 57.9
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.8e-187 660.2 725 54.3
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.1e-186 657.5 658 59.1
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 7.4e-186 654.8 672 56.4
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 4.8e-185 652.1 665 57.6
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 4.8e-185 652.1 651 56.5
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 9.1e-184 647.9 658 57.9
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 9.1e-184 647.9 652 58.4
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.2e-183 647.5 680 57.1
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.5e-183 647.1 708 53.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.6e-183 646.4 709 54.7
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 2.2e-182 643.3 723 56.0
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.6e-175 620.5 712 53.5
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.2e-174 616.7 713 52.0
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.2e-173 612.8 606 57.4
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.1e-172 610.1 685 54.6
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.7e-172 609.0 680 53.7
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 1.0e-171 607.8 658 56.5
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 4.0e-171 605.9 550 63.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 6.7e-171 605.1 663 54.0
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 8.8e-171 604.7 792 47.9
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 3.3e-170 602.8 704 53.3
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.8e-169 599.7 657 55.4
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.8e-169 599.7 630 56.8
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 5.9e-167 592.0 724 53.6
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 5.9e-167 592.0 697 52.4
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.5e-166 588.2 706 52.1
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.2e-164 584.3 720 52.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.1e-160 569.3 720 50.3
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 2.9e-158 563.1 700 50.6
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.8e-158 562.8 706 50.4
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.2e-156 557.8 733 51.2
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.1e-152 544.7 553 56.6
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.0e-151 540.4 578 54.8
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.9e-150 536.6 653 51.0
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 2.4e-144 516.9 654 49.5
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.1e-136 491.5 705 46.2
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 4.1e-136 489.6 703 47.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.7e-134 484.2 687 49.3
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.2e-130 471.5 523 53.0
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 1.2e-130 471.5 686 48.3
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 6.4e-129 465.7 616 47.4
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.7e-126 457.6 562 50.9
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.1e-124 450.7 679 45.4
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.4e-123 447.2 656 45.9
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 2.4e-123 447.2 664 45.6
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 5.8e-122 442.6 580 50.0
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.2e-121 440.7 691 45.3
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.9e-121 440.3 636 46.2
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 5.4e-120 436.0 636 46.7
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 3.9e-118 429.9 496 54.6
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 8.7e-118 428.7 594 47.3
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 2.8e-116 423.7 419 61.1
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.8e-116 423.7 513 50.1
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 8.1e-116 422.2 769 42.0
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.3e-113 414.8 635 43.8
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.1e-112 411.8 628 44.3
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.1e-112 411.8 628 44.3
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.3e-108 398.3 546 46.5
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.0e-106 391.0 701 42.2
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 3.5e-103 380.2 566 44.7
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.1e-99 367.1 611 45.3
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.4e-98 363.6 290 65.5
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 8.4e-89 332.4 189 87.8
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 3.2e-88 330.5 496 45.4
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.8e-78 298.1 486 43.6
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.9e-73 280.8 263 60.1
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.9e-64 251.5 221 56.1
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 5.2e-54 216.9 476 35.7
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.5e-53 215.3 247 49.4
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 2.8e-52 211.1 314 42.7
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 2.8e-52 211.1 219 55.7
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 6.5e-49 199.9 162 66.7
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 4.2e-48 197.2 154 69.5
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 2.3e-46 191.4 264 48.9
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.0e-46 190.7 157 66.2
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.8e-44 184.5 206 43.7
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 4.5e-42 177.2 171 59.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 7.7e-42 176.4 121 70.2
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 5.0e-41 173.7 133 66.9
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 2.8e-39 167.9 232 45.7
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 7.0e-35 153.3 397 34.5
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 9.2e-35 152.9 156 57.1
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 1.6e-34 152.1 150 56.0
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.2e-27 126.3 195 46.7
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 6.0e-26 123.6 141 52.5
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.1e-22 112.8 443 27.8
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.4e-22 112.5 77 64.9
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.1e-17 94.0 130 47.7
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 2.5e-16 91.7 72 55.6
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.5e-16 89.7 72 56.9
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 6.8e-14 83.6 130 44.6
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 6.8e-14 83.6 144 41.0
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.7e-12 79.0 65 61.5
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.7e-12 79.0 62 62.9
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.6e-10 72.4 123 35.0
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-08 66.2 42 71.4
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.6e-08 63.9 55 56.4
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 5.6e-08 63.9 62 51.6
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 1.4e-06 59.3 29 93.1
Sc11g0006970 Simmondsia chinensis HOM05D004806 ORTHO05D005397 4.0e-06 57.8 99 45.5
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 8.9e-06 56.6 55 47.3


User provided reference genes

Program Settings