Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34418 Davidia involucrata HOM05D000339 ORTHO05D000212 8.9e-57 223.4 114 100.0
Dinv20961 Davidia involucrata HOM05D000339 ORTHO05D000212 1.4e-25 119.8 106 64.2
Dinv20982 Davidia involucrata HOM05D000339 ORTHO05D000212 1.4e-25 119.8 106 64.2
Manes.07G126200 Manihot esculenta HOM05D000339 ORTHO05D000212 3.0e-20 102.1 72 72.2
QL08p062675 Quercus lobata HOM05D000339 ORTHO05D000212 1.5e-19 99.8 82 67.1
Manes.10G016700 Manihot esculenta HOM05D000339 ORTHO05D000212 2.5e-19 99.0 72 72.2
Nn2g11407 Nelumbo nucifera HOM05D000339 ORTHO05D000212 3.3e-19 98.6 76 65.8
TAR636G2909 Trochodendron aralioides HOM05D000339 ORTHO05D000212 9.6e-19 97.1 77 63.6
Nitab4.5_0000801g0030 Nicotiana tabacum HOM05D000339 ORTHO05D000212 1.6e-18 96.3 80 66.2
Actinidia29682 Actinidia chinensis HOM05D000339 ORTHO05D000212 3.6e-18 95.1 76 65.8
Actinidia33940 Actinidia chinensis HOM05D000339 ORTHO05D000212 3.6e-18 95.1 106 51.9
Lj8A71T55 Lonicera japonica HOM05D000339 ORTHO05D000212 6.2e-18 94.4 74 68.9
Potri.010G192100 Populus trichocarpa HOM05D000339 ORTHO05D000212 1.1e-17 93.6 77 64.9
Sabra10G0147800 Salix brachista HOM05D002922 ORTHO05D003799 1.8e-17 92.8 77 68.8
GSVIVG01016360001 Vitis vinifera HOM05D000339 ORTHO05D000212 2.4e-17 92.4 64 73.4
Nitab4.5_0000737g0140 Nicotiana tabacum HOM05D000339 ORTHO05D000212 4.0e-17 91.7 74 71.6
MD01G1148000 Malus domestica HOM05D000339 ORTHO05D000212 5.3e-17 91.3 67 74.6
MD07G1215100 Malus domestica HOM05D000339 ORTHO05D000212 1.2e-16 90.1 65 73.8
Cc02_g06840 Coffea canephora HOM05D000339 ORTHO05D000212 1.5e-16 89.7 71 70.4
Prupe.2G247100 Prunus persica HOM05D000339 ORTHO05D000212 1.5e-16 89.7 77 66.2
CiPaw.01G296300 Carya illinoinensis HOM05D000339 ORTHO05D000212 2.6e-16 89.0 107 52.3
Gohir.A10G233000 Gossypium hirsutum HOM05D000339 ORTHO05D000212 2.6e-16 89.0 76 57.9
Potri.008G065400 Populus trichocarpa HOM05D000339 ORTHO05D000212 2.6e-16 89.0 77 64.9
Glyma.02G254800 Glycine max HOM05D000339 ORTHO05D000212 3.4e-16 88.6 74 64.9
Gorai.011G283000 Gossypium raimondii HOM05D000339 ORTHO05D000212 3.4e-16 88.6 110 45.5
Nn2g13641 Nelumbo nucifera HOM05D000339 ORTHO05D000212 3.4e-16 88.6 79 63.3
Lj6g0017205 Lotus japonicus HOM05D000339 ORTHO05D000212 9.9e-16 87.0 110 47.3
Lj1A951T41 Lonicera japonica HOM05D000339 ORTHO05D000212 1.3e-15 86.7 72 59.7
Duzib114G0509 Durio zibethinus HOM05D000339 ORTHO05D000212 3.8e-15 85.1 76 56.6
Gohir.D10G245300 Gossypium hirsutum HOM05D000339 ORTHO05D000212 3.8e-15 85.1 74 56.8
Lalb_Chr04g0250731 Lupinus albus HOM05D000339 ORTHO05D000212 4.9e-15 84.7 73 58.9
AUR62012213 Chenopodium quinoa HOM05D000339 ORTHO05D000212 6.4e-15 84.3 105 49.5
DCAR_011793 Daucus carota HOM05D000339 ORTHO05D000212 6.4e-15 84.3 84 58.3
CSS0035102 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 8.4e-15 84.0 74 60.8
TAR633G0005 Trochodendron aralioides HOM05D000339 ORTHO05D000212 8.4e-15 84.0 77 57.1
AUR62022846 Chenopodium quinoa HOM05D000339 ORTHO05D000212 1.1e-14 83.6 105 47.6
Aqoxy2G00946 Aquilegia oxysepala HOM05D000339 ORTHO05D000212 1.9e-14 82.8 77 55.8
TPR.G16292 Trifolium pratense HOM05D000339 ORTHO05D000212 1.9e-14 82.8 72 58.3
Oeu055835.1 Olea europaea HOM05D000339 ORTHO05D000212 3.2e-14 82.0 79 63.3
Oeu032747.1 Olea europaea HOM05D000339 ORTHO05D000212 4.2e-14 81.6 80 65.0
VMungo0647G2176 Vigna mungo HOM05D000339 ORTHO05D000212 4.2e-14 81.6 73 56.2
Glyma.18G029700 Glycine max HOM05D000339 ORTHO05D000212 1.2e-13 80.1 69 59.4
Sc10g0002200 Simmondsia chinensis HOM05D000339 ORTHO05D000212 1.2e-13 80.1 71 60.6
Oeu032749.1 Olea europaea HOM05D000339 ORTHO05D000212 1.6e-13 79.7 80 63.8
Glyma.11G227800 Glycine max HOM05D000339 ORTHO05D000212 2.1e-13 79.3 107 43.0
Phvul.008G226100 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 2.7e-13 79.0 72 58.3
Rhsim03G0141000 Rhododendron simsii HOM05D000339 ORTHO05D000212 3.5e-13 78.6 112 47.3
vmacro06990 Vaccinium macrocarpon HOM05D000339 ORTHO05D000212 3.5e-13 78.6 110 48.2
Lalb_Chr15g0084241 Lupinus albus HOM05D000339 ORTHO05D000212 4.6e-13 78.2 72 59.7
Lalb_Chr18g0052701 Lupinus albus HOM05D000339 ORTHO05D000212 4.6e-13 78.2 73 60.3
Medtr5g081990 Medicago truncatula HOM05D000339 ORTHO05D000212 4.6e-13 78.2 73 58.9
Peaxi162Scf01313g00123 Petunia axillaris HOM05D000339 ORTHO05D000212 1.8e-12 76.3 64 68.8
RcHm_v2.0_Chr1g0369521 Rosa chinensis HOM05D000339 ORTHO05D000212 2.3e-12 75.9 80 61.2
Hund15974 Selenicereus undatus HOM05D000339 ORTHO05D000212 2.3e-12 75.9 73 60.3
EL10Ac2g04794 Beta vulgaris HOM05D000339 ORTHO05D000212 3.9e-12 75.1 73 54.8
Eucgr.G03036 Eucalyptus grandis HOM05D000339 ORTHO05D000212 3.9e-12 75.1 108 49.1
Ca_05938_v3 Cicer arietinum L. HOM05D000339 ORTHO05D000212 5.1e-12 74.7 63 61.9
Ciclev10033868m.g Citrus clementina HOM05D000339 ORTHO05D000212 6.7e-12 74.3 61 65.6
Duzib128G0043 Durio zibethinus HOM05D000339 ORTHO05D000212 6.7e-12 74.3 107 43.0
FAN10G0905 Fragaria x ananassa HOM05D000339 ORTHO05D000212 8.7e-12 73.9 81 63.0
Phvul.001G241000 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 8.7e-12 73.9 69 53.6
TWI09G1496 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 1.5e-11 73.2 81 58.0
VMungo1383G3457 Vigna mungo HOM05D000339 ORTHO05D000212 1.5e-11 73.2 106 38.7
SGA_v2.0_scaffold60G21024 Striga asiatica HOM05D000339 ORTHO05D000212 1.9e-11 72.8 97 43.3
LjContig00357g0012765 Lotus japonicus HOM05D000339 ORTHO05D000212 2.5e-11 72.4 67 56.7
Haze_17191 Corylus avellana HOM05D000339 ORTHO05D000212 3.3e-11 72.0 79 60.8
FvH4_7g24100 Fragaria vesca HOM05D000339 ORTHO05D000212 3.3e-11 72.0 70 65.7
FAN06G1712 Fragaria x ananassa HOM05D000339 ORTHO05D000212 3.3e-11 72.0 70 65.7
TPR.G19847 Trifolium pratense HOM05D000339 ORTHO05D000212 9.6e-11 70.5 75 58.7
arahy.Tifrunner.gnm1.ann1.9WG3Z1 Arachis hypogaea HOM05D000339 ORTHO05D000212 1.6e-10 69.7 90 47.8
arahy.Tifrunner.gnm1.ann1.PLVV0P Arachis hypogaea HOM05D000339 ORTHO05D000212 2.1e-10 69.3 93 46.2
PGR142G4118 Punica granatum HOM05D000339 ORTHO05D000212 2.8e-10 68.9 110 45.5
Thecc.10G025400 Theobroma cacao HOM05D000339 ORTHO05D000212 2.8e-10 68.9 87 51.7
FAN01G0504 Fragaria x ananassa HOM05D000339 ORTHO05D000212 3.6e-10 68.6 70 65.7
Cpa.g.sc19.201 Carica papaya HOM05D000339 ORTHO05D000212 4.8e-10 68.2 81 56.8
arahy.Tifrunner.gnm1.ann1.XEPS1S Arachis hypogaea HOM05D000339 ORTHO05D000212 1.1e-09 67.0 78 57.7
FAN03G0507 Fragaria x ananassa HOM05D000339 ORTHO05D000212 1.4e-09 66.6 70 62.9
Cfa001357 Carpinus fangiana HOM05D000339 ORTHO05D000212 1.8e-09 66.2 80 57.5
Psat5g127000 Pisum sativum HOM05D000339 ORTHO05D000212 1.8e-09 66.2 75 49.3
arahy.Tifrunner.gnm1.ann1.ZS5XSZ Arachis hypogaea HOM05D000339 ORTHO05D000212 2.4e-09 65.9 78 56.4
Psat2g034640 Pisum sativum HOM05D000339 ORTHO05D000212 2.4e-09 65.9 75 56.0
PSO339G1406 Papaver somniferum HOM05D000339 ORTHO05D000212 2.0e-08 62.8 84 53.6
PSO801G0329 Papaver somniferum HOM05D000339 ORTHO05D000212 3.4e-08 62.0 84 53.6
Ah.10g036430 Amaranthus hybridus HOM05D002922 ORTHO05D003799 7.6e-08 60.8 98 40.8
COL.COLO4_25651 Corchorus olitorius HOM05D000339 ORTHO05D000212 9.9e-08 60.5 94 42.6
CAN.G613.2 Capsicum annuum HOM05D000339 ORTHO05D000212 1.3e-07 60.1 101 40.6
Solyc03g096300.3 Solanum lycopersicum HOM05D000339 ORTHO05D000212 1.7e-07 59.7 80 50.0
SalBow6G6286 Salvia bowleyana HOM05D000339 ORTHO05D000212 2.2e-07 59.3 88 48.9
Atru.chr12.233 Acer truncatum HOM05D000339 ORTHO05D000212 3.8e-07 58.5 85 47.1
A05p38050 Brassica napus HOM05D000339 ORTHO05D000212 3.8e-07 58.5 81 49.4
BraA05t22597Z Brassica rapa HOM05D000339 ORTHO05D000212 3.8e-07 58.5 81 49.4
PGSC0003DMG400020731 Solanum tuberosum HOM05D000339 ORTHO05D000212 4.9e-07 58.2 97 43.3
Sopen03g026430 Solanum pennellii HOM05D000339 ORTHO05D000212 8.4e-07 57.4 80 48.8
CANSAT56G0481 Cannabis sativa HOM05D000339 ORTHO05D000212 1.4e-06 56.6 69 52.2
Sp3g09530 Schrenkiella parvula HOM05D000339 ORTHO05D000212 1.4e-06 56.6 83 49.4
BcaC05g29393 Brassica carinata HOM05D000339 ORTHO05D000212 2.4e-06 55.8 81 48.1
C05p56820 Brassica napus HOM05D000339 ORTHO05D000212 2.4e-06 55.8 81 48.1
BolC5t34348H Brassica oleracea HOM05D000339 ORTHO05D000212 2.4e-06 55.8 81 48.1
Thhalv10022017m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 2.4e-06 55.8 81 48.1
Ca_17150_v3 Cicer arietinum L. HOM05D000339 ORTHO05D000212 7.1e-06 54.3 44 61.4


User provided reference genes

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