Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.0e-115 419.1 212 100.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.5e-81 306.6 205 72.7
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-81 306.2 206 75.2
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.1e-80 302.8 204 74.5
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.8e-79 299.7 206 73.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.4e-79 299.3 205 73.7
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.4e-79 299.3 204 72.5
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.0e-79 297.4 206 73.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-78 297.0 206 73.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.4e-78 295.4 204 70.6
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.4e-78 295.4 206 72.8
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.4e-78 295.4 204 71.6
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.4e-78 295.4 206 74.3
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.5e-78 295.0 206 73.3
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 4.5e-78 295.0 206 74.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.8e-78 294.7 204 71.1
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 9.9e-78 293.9 205 71.7
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.7e-77 293.1 205 73.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.7e-77 293.1 204 71.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-77 292.0 202 70.3
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.8e-77 292.0 202 70.3
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.9e-77 291.6 198 76.8
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.4e-77 290.8 205 72.2
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.4e-76 290.0 206 72.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.2e-76 288.9 202 69.3
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 3.2e-76 288.9 204 73.0
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.2e-76 288.5 206 72.3
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.4e-76 288.1 202 72.8
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.4e-76 288.1 204 69.6
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 7.1e-76 287.7 205 72.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-75 287.0 207 72.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.6e-75 286.6 209 70.8
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.6e-75 286.6 205 69.8
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.1e-75 286.2 206 68.9
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.7e-75 285.8 204 70.6
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 4.6e-75 285.0 213 67.6
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 5.1e-74 281.6 207 69.6
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 6.7e-74 281.2 202 71.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 8.7e-74 280.8 203 71.9
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.1e-73 280.4 204 71.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.1e-73 280.4 202 69.3
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.5e-73 280.0 204 66.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.5e-73 279.3 202 71.8
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 4.3e-73 278.5 206 70.4
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 9.6e-73 277.3 198 70.7
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.3e-72 276.9 204 68.6
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.6e-72 276.6 206 68.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.6e-72 276.6 206 68.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-72 276.2 204 68.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.7e-72 275.4 204 68.6
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.4e-71 273.5 206 67.0
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.0e-71 271.9 198 71.2
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 5.3e-71 271.6 190 71.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 9.0e-71 270.8 204 67.2
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 8.4e-69 264.2 204 64.2
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.5e-68 261.5 204 67.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 7.1e-68 261.2 204 64.2
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 4.6e-67 258.5 204 62.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.3e-66 256.9 205 67.3
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.8e-66 256.5 208 66.3
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 3.0e-66 255.8 209 64.6
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 2.5e-65 252.7 207 64.3
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.3e-65 252.3 202 66.8
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.8e-64 249.2 203 64.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.5e-62 243.4 210 61.4
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.7e-61 240.0 205 61.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.8e-61 238.8 200 64.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 3.8e-61 238.8 205 61.5
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.8e-61 238.8 204 62.7
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 8.4e-61 237.7 200 64.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.4e-60 236.9 204 63.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.5e-60 235.0 204 61.8
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-59 233.8 203 62.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.0e-58 229.2 200 59.5
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 7.4e-57 224.6 214 58.4
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.3e-56 223.8 206 60.2
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 8.2e-56 221.1 204 56.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 9.0e-55 217.6 183 61.7
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 9.0e-55 217.6 205 56.1
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.6e-54 216.1 208 56.2
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.5e-54 215.3 211 54.0
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.3e-53 213.8 202 55.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.2e-53 213.0 176 61.9
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 5.0e-53 211.8 213 54.0
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.1e-52 210.7 208 54.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.2e-52 208.8 195 57.4
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.6e-51 205.3 165 62.4
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 4.6e-51 205.3 209 53.6
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.8e-50 203.4 206 54.4
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.3e-50 203.0 209 53.6
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.5e-49 200.3 202 53.5
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.5e-49 200.3 203 53.2
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 7.4e-49 198.0 204 52.9
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 7.4e-49 198.0 202 53.5
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.8e-48 196.1 202 49.5
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.7e-48 195.7 203 53.2
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.7e-48 195.7 206 52.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.1e-47 194.1 204 49.0
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-47 193.0 198 52.5
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.1e-47 192.6 201 52.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.1e-47 192.6 208 51.0
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 4.1e-47 192.2 203 52.2
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 4.1e-47 192.2 203 53.7
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-47 191.8 202 50.5
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 6.9e-47 191.4 217 49.8
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-46 190.3 204 51.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-46 190.3 208 50.5
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.6e-46 189.5 205 51.2
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 3.4e-46 189.1 211 48.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-46 188.3 198 52.0
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-46 188.3 198 52.0
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.0e-45 187.6 209 47.8
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-45 187.2 208 50.5
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-45 187.2 147 63.9
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.7e-45 186.8 177 53.1
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.2e-45 186.4 209 50.7
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-45 186.0 204 50.5
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-45 186.0 204 50.5
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 5.0e-45 185.3 204 49.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 6.5e-45 184.9 200 50.0
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.5e-45 184.5 208 50.0
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.1e-44 184.1 197 49.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-44 183.3 205 50.2
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 5.5e-44 181.8 200 50.0
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-44 181.4 205 48.8
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 9.4e-44 181.0 204 50.5
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.0e-42 177.6 134 61.9
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.4e-42 177.2 178 52.2
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.3e-42 176.4 205 46.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 6.7e-42 174.9 169 53.8
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.1e-41 174.1 201 49.8
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-41 171.8 204 47.5
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 5.7e-41 171.8 204 47.5
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 7.4e-41 171.4 178 52.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-38 163.7 204 46.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.6e-38 163.7 166 50.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.0e-38 163.3 204 46.1
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 5.9e-38 161.8 174 44.8
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.3e-37 160.6 202 47.5
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.3e-37 160.6 202 48.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.3e-37 160.6 199 44.7
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.2e-35 154.1 196 48.5
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.0e-35 151.4 204 46.1
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.8e-34 150.2 199 47.2
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-34 149.8 204 48.0
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.3e-34 149.8 204 48.0
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 6.7e-34 148.3 205 47.3
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 6.7e-34 148.3 205 47.3
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.5e-33 144.8 159 46.5
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.7e-32 142.5 182 39.6
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.1e-31 137.9 159 44.7
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.5e-28 129.8 159 42.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-25 120.6 202 39.1
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.8e-25 117.9 159 39.0
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-24 117.5 159 40.3
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 8.5e-21 104.8 56 89.3
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 8.5e-21 104.8 56 89.3
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 7.2e-20 101.7 165 41.8
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 3.4e-09 66.2 142 33.8
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 8.3e-08 61.6 98 39.8
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.9e-06 55.5 84 36.9


User provided reference genes

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