Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 0.0e+00 1167.1 577 100.0
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 7.7e-250 867.1 497 88.3
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.2e-248 861.7 578 76.8
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.9e-244 847.8 580 76.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.7e-233 812.8 581 73.7
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 8.9e-230 800.4 552 73.9
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.5e-226 788.5 560 72.7
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.3e-224 781.9 576 71.4
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.2e-221 773.5 583 70.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 5.8e-221 771.2 574 69.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 6.6e-217 757.7 577 69.3
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 7.3e-216 754.2 581 68.7
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.1e-215 752.7 573 68.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 5.2e-214 748.0 576 67.4
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 5.4e-211 738.0 574 66.0
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 7.1e-211 737.6 576 66.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.7e-209 730.7 573 65.8
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-208 730.3 572 68.4
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.3e-204 716.8 577 65.9
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.2e-204 716.1 585 65.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.9e-204 715.7 572 65.7
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 5.4e-203 711.4 563 66.3
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.7e-202 709.1 579 64.9
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 7.8e-202 707.6 612 61.9
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.0e-201 707.2 560 64.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.0e-201 707.2 572 64.9
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.0e-201 707.2 580 63.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.6e-200 700.7 572 65.4
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.6e-199 699.9 567 65.3
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-199 699.5 575 65.7
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.2e-199 698.0 561 63.3
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 8.1e-199 697.6 576 63.5
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-198 696.4 575 65.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.1e-198 695.7 575 65.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 3.1e-198 695.7 578 64.0
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.1e-198 695.7 570 64.2
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.5e-197 693.3 575 63.8
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 4.5e-197 691.8 554 65.2
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.2e-196 689.5 557 63.9
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 6.4e-196 688.0 573 63.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.9e-195 686.4 572 63.8
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 3.5e-194 682.2 577 62.7
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 7.9e-194 681.0 587 63.7
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.8e-193 679.9 572 62.9
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.8e-193 679.9 575 63.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.6e-191 673.3 572 63.3
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 4.0e-190 668.7 577 62.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.5e-189 666.8 568 64.8
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 2.2e-188 662.9 549 64.5
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 2.9e-188 662.5 494 67.2
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 6.4e-188 661.4 574 62.7
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.4e-187 660.2 567 62.8
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.9e-187 659.8 569 62.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 3.2e-187 659.1 579 62.0
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 4.2e-187 658.7 579 60.1
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 4.2e-187 658.7 568 62.7
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.6e-186 656.8 565 61.9
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 5.1e-185 651.7 580 59.1
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.5e-184 650.2 570 61.8
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 9.6e-184 647.5 568 61.1
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 9.6e-184 647.5 559 61.7
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.3e-183 647.1 556 62.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.8e-183 646.0 536 63.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.1e-182 642.5 562 61.2
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 4.0e-182 642.1 564 59.2
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.5e-181 640.2 591 59.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.4e-181 639.0 575 59.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.6e-181 637.9 557 60.0
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 4.9e-180 635.2 590 59.5
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.4e-179 633.6 555 61.3
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.9e-179 633.3 586 59.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 3.2e-179 632.5 572 58.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.1e-179 631.3 531 61.4
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.6e-178 630.2 588 58.5
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 4.6e-178 628.6 572 56.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 4.6e-178 628.6 596 58.6
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 2.3e-177 626.3 578 58.3
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 3.9e-177 625.5 560 58.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 5.1e-177 625.2 576 59.0
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.7e-176 621.7 566 58.8
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 5.7e-176 621.7 519 63.4
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 7.4e-176 621.3 486 64.8
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.3e-175 618.2 573 59.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.8e-174 616.7 554 58.3
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.5e-173 613.6 596 59.1
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.9e-172 609.4 576 59.2
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.9e-171 606.7 525 60.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 2.1e-170 603.2 538 59.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.0e-169 599.4 567 57.0
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 3.1e-166 589.3 564 54.4
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.0e-164 584.3 571 54.6
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.9e-164 582.8 570 55.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 6.5e-164 581.6 603 52.9
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.5e-163 579.7 498 59.0
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.2e-162 577.4 578 54.3
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.9e-162 574.7 549 53.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.4e-161 573.9 549 55.2
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.5e-160 570.5 557 56.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 2.2e-159 566.6 514 56.4
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 2.2e-159 566.6 514 56.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.2e-159 566.6 514 56.4
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.2e-159 564.7 562 53.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 5.3e-158 562.0 515 55.7
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 5.3e-158 562.0 515 55.7
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.9e-157 558.5 494 59.7
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.3e-156 557.4 515 55.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.9e-156 556.2 550 53.8
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.4e-155 553.9 534 53.7
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 7.2e-155 551.6 580 52.9
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.6e-154 549.3 574 53.1
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 6.1e-154 548.5 525 56.4
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.4e-153 547.4 577 53.0
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 3.0e-153 546.2 580 52.9
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 9.7e-152 541.2 577 52.5
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.7e-151 540.4 562 53.0
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.0e-149 533.5 550 52.2
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.5e-149 532.7 508 54.1
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.7e-149 531.6 575 53.2
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.5e-147 527.3 455 61.8
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-144 517.7 468 59.8
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 2.0e-144 516.9 576 51.9
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.8e-143 513.1 422 62.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.5e-141 506.1 461 58.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.9e-139 500.4 522 51.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.5e-136 490.7 544 50.6
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 6.3e-135 485.3 493 54.2
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.5e-128 464.2 532 49.4
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.8e-125 451.8 581 50.4
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.6e-122 443.0 493 51.1
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.6e-122 443.0 493 51.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 8.0e-122 441.8 503 47.7
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 2.0e-120 437.2 625 41.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 6.0e-117 425.6 576 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 7.5e-112 408.7 545 42.8
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.9e-110 404.1 389 53.7
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 5.4e-102 375.9 517 44.3
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.1e-93 347.4 307 57.3
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 3.9e-76 290.0 553 35.8
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 6.2e-74 282.7 507 36.1
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.6e-72 275.8 360 45.6
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.0e-64 251.1 287 51.2
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.2e-50 204.5 186 54.3
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.5e-48 196.8 139 68.3
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.2e-46 190.3 195 46.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.1e-22 112.5 158 34.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 4.2e-22 110.5 66 80.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.5e-14 84.7 99 50.5
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-07 61.2 39 66.7
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.1e-06 59.3 66 45.5
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.9e-06 58.5 60 48.3


User provided reference genes

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