Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 4.5e-161 571.2 294 100.0
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 6.5e-128 461.1 294 83.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.1e-124 450.3 294 81.3
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.8e-120 435.3 289 79.2
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.9e-119 433.0 291 79.7
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.2e-119 431.8 292 75.3
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 5.5e-119 431.4 293 77.1
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 7.2e-119 431.0 291 78.7
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-118 430.3 294 77.2
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.1e-118 429.5 291 77.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 2.7e-118 429.1 286 79.7
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 6.1e-118 427.9 294 78.2
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.8e-117 426.4 294 77.2
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.5e-116 423.3 298 76.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-116 422.2 292 75.0
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-116 422.2 292 75.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 5.7e-116 421.4 291 75.9
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 9.8e-116 420.6 292 75.0
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.7e-115 418.7 292 74.7
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.8e-115 418.3 289 76.1
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 6.3e-115 417.9 291 77.0
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 6.3e-115 417.9 289 76.1
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 8.3e-115 417.5 289 78.2
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.3e-115 417.5 292 74.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.4e-114 416.8 292 74.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.4e-114 416.0 294 74.5
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.4e-114 416.0 294 74.5
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.1e-114 415.6 289 76.8
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-114 415.6 292 74.7
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.1e-114 415.2 291 73.9
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.4e-114 414.8 292 73.6
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 7.0e-114 414.5 294 74.5
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.6e-113 413.3 292 72.9
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.5e-113 412.1 291 74.6
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.5e-113 411.8 305 72.1
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.3e-112 410.2 292 73.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-112 409.8 299 73.2
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.7e-112 409.8 294 75.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.9e-112 409.1 289 73.4
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 5.0e-112 408.3 294 73.8
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 6.5e-112 407.9 293 74.1
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 6.5e-112 407.9 290 74.8
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 8.5e-112 407.5 293 74.4
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.1e-111 407.1 293 74.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.5e-111 406.8 294 75.5
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.5e-111 404.8 288 73.3
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 5.5e-111 404.8 290 72.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.2e-111 404.4 293 72.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 9.4e-111 404.1 291 71.1
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.2e-110 403.7 293 73.7
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.2e-110 403.7 293 72.0
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.6e-110 403.3 290 73.8
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 6.1e-110 401.4 289 72.3
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 6.1e-110 401.4 294 71.8
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 8.0e-110 401.0 290 73.1
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 8.0e-110 401.0 292 72.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.4e-109 400.2 290 72.8
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 3.0e-109 399.1 293 71.7
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 4.0e-109 398.7 290 72.8
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 6.8e-109 397.9 292 71.6
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 8.8e-109 397.5 293 71.3
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 8.8e-109 397.5 289 71.3
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.0e-108 396.4 290 70.7
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 2.0e-108 396.4 289 71.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.6e-108 396.0 294 70.1
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.6e-108 396.0 294 70.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.4e-108 395.6 288 71.5
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.7e-108 394.8 288 71.5
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 5.7e-108 394.8 294 70.1
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 7.5e-108 394.4 293 72.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 9.8e-108 394.0 290 71.7
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.3e-107 393.7 289 74.4
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.7e-107 393.3 290 71.0
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.8e-107 392.5 290 71.4
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.7e-107 392.1 292 70.5
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.9e-107 391.7 344 64.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 8.3e-107 391.0 290 70.7
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.1e-106 390.6 290 70.7
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.4e-106 389.4 290 70.3
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.2e-105 387.1 320 66.9
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.6e-105 386.7 294 68.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.7e-105 386.0 304 67.1
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.5e-105 385.6 352 63.1
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.7e-105 384.4 289 72.0
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.0e-104 384.0 293 69.3
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.3e-104 383.6 383 59.0
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 3.8e-104 382.1 299 68.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.5e-103 380.2 293 69.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.3e-103 379.0 293 69.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 7.3e-103 377.9 293 68.6
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 9.5e-103 377.5 293 68.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 9.5e-103 377.5 293 68.6
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-102 376.7 293 68.3
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-102 376.7 293 68.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-102 376.7 293 68.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.8e-102 375.9 293 68.3
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 8.0e-102 374.4 293 68.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.4e-101 373.6 293 67.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.0e-101 372.5 279 69.2
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-101 371.3 289 68.5
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 7.5e-100 367.9 289 68.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 7.5e-100 367.9 289 68.5
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 7.5e-100 367.9 289 68.5
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 6.4e-99 364.8 293 67.6
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.8e-98 363.2 273 70.7
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.4e-98 362.8 288 65.3
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 4.1e-98 362.1 285 66.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.2e-97 360.5 288 64.6
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.0e-96 355.9 264 73.5
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.9e-95 353.2 335 58.8
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.6e-92 342.8 288 62.5
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.8e-92 341.7 282 61.7
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.9e-91 339.3 502 45.8
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.3e-91 337.8 502 45.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 7.0e-90 334.7 286 61.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.9e-87 326.6 292 56.8
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.8e-86 322.8 290 57.2
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.8e-86 322.8 282 60.3
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.4e-84 315.5 228 75.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 6.2e-78 295.0 282 56.0
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.1e-77 292.7 285 56.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 5.2e-77 292.0 280 55.0
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-76 289.3 272 59.2
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.4e-76 288.9 280 53.6
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-76 288.9 285 56.5
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-75 287.3 281 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.8e-75 285.8 280 52.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-74 284.3 267 59.2
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 5.4e-74 282.0 180 83.9
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-73 280.0 280 57.1
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-73 280.0 272 58.8
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-72 275.4 285 55.4
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 5.1e-72 275.4 285 55.8
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.9e-71 273.5 271 57.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.3e-71 272.3 301 55.8
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.1e-70 270.0 279 50.5
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.4e-68 262.3 281 55.5
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 4.2e-66 255.8 297 46.8
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-64 249.6 284 53.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.5e-63 246.5 281 46.3
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.6e-62 243.8 288 51.0
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 8.1e-62 241.5 242 56.6
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-60 237.7 272 52.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 9.9e-60 234.6 139 83.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 4.6e-57 225.7 283 46.6
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.9e-48 196.1 136 77.2
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 7.4e-47 191.8 267 44.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-46 191.0 147 69.4
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-46 189.5 284 45.4
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 5.3e-45 185.7 131 72.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 4.2e-42 176.0 137 65.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.3e-40 171.0 96 90.6
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-39 167.5 130 66.9
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-39 167.5 165 57.0
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.9e-39 167.2 181 56.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-37 160.2 119 73.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.1e-37 159.8 425 32.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 8.5e-35 151.8 245 41.6
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.3e-30 137.9 117 63.2
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.9e-26 124.0 271 33.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.1e-25 120.6 146 47.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 4.6e-25 119.4 73 87.7
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.9e-24 116.3 306 29.1
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 5.1e-24 115.9 280 30.0
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 8.5e-19 98.6 167 38.3
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 5.5e-18 95.9 66 68.2
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-17 94.0 52 92.3
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.1e-17 94.0 70 67.1
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-17 93.6 52 90.4
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-17 93.6 52 90.4
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.6e-17 93.2 59 79.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 6.1e-17 92.4 52 90.4
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-16 91.3 52 90.4
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.3e-16 90.5 69 62.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-16 90.1 81 55.6
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 5.2e-16 89.4 71 69.0
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-15 88.2 50 88.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.0e-15 87.4 67 62.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.0e-15 87.4 67 62.7
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.2e-14 84.0 67 59.7
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.8e-14 82.8 64 62.5
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-13 81.6 128 41.4
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 8.5e-11 72.0 55 63.6
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.1e-09 67.4 70 51.4
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.5e-07 61.2 40 77.5
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 7.5e-07 58.9 48 60.4


User provided reference genes

Program Settings