Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.8e-158 562.0 299 100.0
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.4e-146 523.1 299 92.6
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.0e-145 519.2 299 91.6
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 4.3e-143 511.5 299 90.0
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 2.3e-141 505.8 299 89.6
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 4.4e-140 501.5 300 88.7
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 2.4e-138 495.7 301 88.7
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.1e-138 495.0 299 88.3
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 7.1e-138 494.2 299 88.6
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.7e-136 489.6 307 86.6
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.7e-136 489.6 307 86.6
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.9e-136 488.4 299 86.0
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 5.1e-136 488.0 299 87.0
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.1e-136 488.0 302 86.4
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.1e-136 488.0 302 86.4
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 6.6e-136 487.6 303 85.8
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 6.6e-136 487.6 303 85.8
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 1.5e-135 486.5 302 86.1
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 2.5e-135 485.7 302 86.4
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 3.3e-135 485.3 308 85.1
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 3.3e-135 485.3 303 86.1
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 5.6e-135 484.6 302 86.1
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.6e-135 484.6 303 85.5
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 8.1e-134 480.7 300 85.0
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.1e-133 480.3 295 86.4
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.9e-133 477.2 294 84.4
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.0e-132 476.1 301 83.1
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 3.4e-132 475.3 299 82.9
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.8e-132 474.6 300 83.7
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 7.6e-132 474.2 301 82.7
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 7.6e-132 474.2 296 83.8
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 7.6e-132 474.2 300 83.7
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 9.9e-132 473.8 301 82.7
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.7e-131 473.0 301 84.4
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 2.2e-131 472.6 305 83.6
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.8e-131 471.9 299 83.3
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 6.4e-131 471.1 302 84.1
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 8.4e-131 470.7 306 82.4
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 8.4e-131 470.7 306 82.4
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 1.1e-130 470.3 303 82.2
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.4e-130 469.9 306 82.0
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.4e-130 469.9 299 83.3
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 2.4e-130 469.2 306 82.0
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 5.4e-130 468.0 310 80.3
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 9.2e-130 467.2 308 82.8
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.7e-129 465.7 306 81.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 6.6e-128 461.1 301 82.4
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 8.7e-128 460.7 292 82.2
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 8.7e-128 460.7 292 82.2
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 8.7e-128 460.7 300 81.7
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 8.7e-128 460.7 298 81.5
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-127 459.9 265 90.6
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.3e-127 458.8 266 90.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 3.3e-127 458.8 291 81.8
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 4.3e-127 458.4 299 80.3
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 5.6e-127 458.0 351 72.6
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.3e-127 457.6 268 89.2
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.3e-127 457.6 301 80.4
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.6e-126 456.4 300 81.7
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.1e-126 456.1 265 89.8
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 2.8e-126 455.7 285 84.6
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 2.8e-126 455.7 289 82.4
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 3.6e-126 455.3 301 79.4
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 8.1e-126 454.1 299 80.3
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 1.1e-125 453.8 291 80.8
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.8e-125 453.0 280 85.4
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 6.9e-125 451.1 298 78.9
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.5e-124 449.9 298 78.2
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 2.0e-124 449.5 304 78.3
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 3.8e-123 445.3 301 81.7
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 4.9e-123 444.9 298 77.5
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.1e-122 443.7 300 79.0
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.1e-122 443.7 302 78.8
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.4e-122 443.4 287 81.5
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.4e-122 443.4 300 79.0
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.4e-122 443.4 300 79.3
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 1.9e-122 443.0 287 81.5
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.9e-122 443.0 298 76.8
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.4e-122 442.6 298 77.2
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 3.2e-122 442.2 284 81.3
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 5.4e-122 441.4 298 77.9
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 9.3e-122 440.7 298 77.2
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.1e-121 439.5 298 77.5
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.1e-121 439.5 299 76.9
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 2.7e-121 439.1 299 77.3
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 2.7e-121 439.1 328 73.2
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 7.8e-121 437.6 299 77.9
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.0e-120 437.2 297 78.5
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.7e-120 436.4 302 76.2
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.7e-120 436.4 266 88.0
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 3.9e-120 435.3 280 81.1
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 5.1e-120 434.9 276 81.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 6.6e-120 434.5 299 77.9
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.1e-119 433.7 283 79.5
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.5e-119 433.3 329 72.9
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 7.3e-119 431.0 284 78.5
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 2.1e-118 429.5 289 78.5
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.8e-118 429.1 276 80.8
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 3.6e-118 428.7 280 80.0
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 3.6e-118 428.7 321 72.6
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 4.8e-118 428.3 284 77.8
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.4e-117 426.0 284 81.7
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 5.3e-117 424.9 281 79.4
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 6.9e-117 424.5 283 78.4
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 7.6e-116 421.0 283 77.7
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 9.9e-116 420.6 288 77.4
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 9.9e-116 420.6 288 77.4
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.9e-115 419.1 276 78.6
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.9e-115 419.1 299 74.6
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 6.4e-115 417.9 299 74.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.4e-115 417.5 288 77.1
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.4e-115 417.5 265 85.3
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.2e-113 413.7 257 82.9
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.0e-112 410.6 284 74.3
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.9e-112 408.7 299 72.2
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.7e-112 407.9 233 89.3
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 8.1e-110 401.0 308 70.5
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.1e-109 400.6 306 73.2
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.1e-109 400.6 302 74.2
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.8e-109 399.8 302 74.5
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.9e-109 397.9 300 74.0
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 6.4e-107 391.3 349 64.2
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 1.1e-106 390.6 293 73.0
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.1e-106 390.6 302 68.2
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.2e-105 387.1 297 69.7
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 3.7e-102 375.6 212 93.9
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.8e-101 373.2 283 67.5
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 7.6e-100 367.9 286 65.7
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 3.5e-97 359.0 280 66.8
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 2.4e-93 346.3 293 67.6
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.0e-88 330.9 223 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.4e-88 330.5 283 59.4
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 6.9e-85 318.2 267 66.3
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 3.4e-84 315.8 308 58.4
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 4.5e-84 315.5 198 88.4
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 2.0e-79 300.1 207 72.0
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.1e-77 294.3 295 52.9
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 9.1e-77 291.2 163 92.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.0e-76 290.0 222 68.9
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.8e-72 276.9 252 62.3
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 3.5e-68 262.7 278 53.6
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.0e-64 251.1 163 82.8
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 8.5e-59 231.5 250 47.2
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 9.2e-45 184.9 169 64.5
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 3.5e-44 183.0 178 57.9
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 3.5e-44 183.0 178 57.9
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 6.4e-38 162.2 107 73.8
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 6.4e-38 162.2 107 73.8
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 2.7e-36 156.8 145 65.5
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 3.1e-32 143.3 95 75.8
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 2.0e-31 140.6 94 76.6
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 4.9e-30 136.0 81 84.0
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 7.8e-28 128.6 96 72.9
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.4e-24 117.9 85 67.1
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 6.4e-22 109.0 86 70.9
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 4.0e-16 89.7 58 79.3
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 5.8e-15 85.9 74 59.5
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.7e-14 84.3 75 60.0
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.4e-14 82.0 52 84.6
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 4.2e-13 79.7 74 60.8
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.2e-12 78.2 68 60.3
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.6e-12 77.8 60 60.0
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.6e-12 77.8 82 51.2
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.1e-12 77.4 70 68.6
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 2.7e-12 77.0 79 51.9
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 4.6e-12 76.3 68 60.3
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 1.7e-11 74.3 113 41.6
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 6.2e-09 65.9 40 77.5
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 4.0e-08 63.2 39 76.9
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 4.0e-08 63.2 39 76.9


User provided reference genes

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