Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 3.8e-66 254.6 121 100.0
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 2.8e-16 89.0 47 87.2
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 1.8e-15 86.3 47 80.9
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 2.3e-15 85.9 47 76.6
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 4.0e-15 85.1 47 78.7
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 5.2e-15 84.7 47 78.7
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 5.2e-15 84.7 45 80.0
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 5.2e-15 84.7 47 78.7
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 5.2e-15 84.7 46 80.4
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 6.8e-15 84.3 46 76.1
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.2e-14 83.6 47 80.9
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 1.5e-14 83.2 47 74.5
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 1.5e-14 83.2 47 72.3
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 1.5e-14 83.2 47 74.5
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 2.6e-14 82.4 59 67.8
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 3.4e-14 82.0 47 76.6
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 4.4e-14 81.6 46 78.3
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 4.4e-14 81.6 47 74.5
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 7.5e-14 80.9 50 66.0
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.3e-13 80.1 50 66.0
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 2.2e-13 79.3 47 72.3
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 2.9e-13 79.0 47 72.3
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 3.7e-13 78.6 63 58.7
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.1e-12 77.0 47 74.5
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 1.4e-12 76.6 47 72.3
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 1.9e-12 76.3 47 70.2
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 4.1e-12 75.1 47 72.3
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 7.1e-12 74.3 47 72.3
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 1.6e-11 73.2 47 68.1
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.7e-11 72.4 47 68.1
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 6.0e-11 71.2 39 82.1
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 7.8e-11 70.9 66 50.0
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 7.8e-11 70.9 66 50.0
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 7.8e-11 70.9 47 68.1
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 7.8e-11 70.9 47 68.1
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 7.8e-11 70.9 47 68.1
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 7.8e-11 70.9 47 68.1
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 1.0e-10 70.5 47 66.0
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 1.7e-10 69.7 47 61.7
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 8.6e-10 67.4 47 61.7
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 8.6e-10 67.4 77 42.9
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 1.5e-09 66.6 47 70.2
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 4.3e-09 65.1 46 67.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 4.3e-09 65.1 37 75.7
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 7.3e-09 64.3 47 57.4
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 9.5e-09 63.9 47 59.6
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 9.5e-09 63.9 47 59.6
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 1.2e-08 63.5 47 57.4
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 1.2e-08 63.5 47 57.4
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 1.2e-08 63.5 48 68.8
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 2.8e-08 62.4 47 57.4
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 8.1e-08 60.8 47 57.4
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 1.8e-07 59.7 46 54.3
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 2.0e-06 56.2 47 51.1
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 5.8e-06 54.7 46 52.2
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 9.9e-06 53.9 47 46.8


User provided reference genes

Program Settings