Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 4.1e-38 161.0 86 100.0
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.9e-35 152.1 86 94.2
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 9.4e-35 149.8 85 92.9
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.6e-34 149.1 86 89.5
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.6e-34 149.1 86 88.4
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.6e-34 147.9 86 87.2
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.0e-33 146.4 84 89.3
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 82.6
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 82.6
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 89.5
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 2.3e-33 145.2 86 82.6
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 5.2e-33 144.1 84 82.1
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 6.7e-33 143.7 86 81.4
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 6.7e-33 143.7 86 81.4
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 3.3e-32 141.4 84 79.8
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 4.4e-32 141.0 86 87.2
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 5.7e-32 140.6 85 77.6
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 7.4e-32 140.2 84 85.7
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 84.9
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 84.9
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 2.8e-31 138.3 88 83.0
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 3.7e-31 137.9 86 73.3
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 83.7
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 77.4
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 76.2
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 8.2e-31 136.7 84 88.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.4e-30 136.0 86 76.7
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 76.2
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.8e-30 135.6 86 73.3
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 3.1e-30 134.8 81 87.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 5.3e-30 134.0 84 75.0
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 7.0e-30 133.7 79 79.7
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 9.1e-30 133.3 84 75.0
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 9.1e-30 133.3 84 73.8
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.6e-29 132.5 79 78.5
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.0e-29 132.1 76 93.4
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.5e-29 131.0 76 80.3
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 4.5e-29 131.0 86 70.9
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 4.5e-29 131.0 86 82.6
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 5.9e-29 130.6 76 78.9
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.9e-29 130.6 76 78.9
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.0e-28 129.8 84 72.6
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.0e-28 129.8 83 72.3
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-28 129.4 76 78.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-28 129.4 76 78.9
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-28 129.4 76 78.9
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 3.8e-28 127.9 84 72.6
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.0e-28 127.5 76 76.3
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 8.5e-28 126.7 84 73.8
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 8.5e-28 126.7 89 67.4
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.1e-27 126.3 84 71.4
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.1e-27 126.3 86 67.4
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 68.6
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 4.2e-27 124.4 93 65.6
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 4.2e-27 124.4 80 72.5
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 89 67.4
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 89 67.4
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.2e-27 124.4 76 75.0
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 4.2e-27 124.4 74 89.2
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 7.2e-27 123.6 84 79.8
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 7.2e-27 123.6 76 75.0
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 9.4e-27 123.2 70 81.4
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 9.4e-27 123.2 70 81.4
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 76 73.7
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.6e-26 122.5 76 73.7
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.6e-26 122.5 79 70.9
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.1e-26 122.1 79 69.6
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.7e-26 121.7 93 63.4
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.7e-26 121.7 70 80.0
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 3.6e-26 121.3 85 67.1
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 3.6e-26 121.3 84 67.9
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 75.3
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.1e-26 120.6 79 79.7
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 6.1e-26 120.6 86 66.3
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 6.1e-26 120.6 70 78.6
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 66.3
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.0e-25 119.8 84 69.0
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 75.3
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 64.7
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.3e-25 118.6 85 65.9
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.3e-25 118.6 85 65.9
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.0e-25 118.2 84 66.7
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 4.0e-25 117.9 84 67.9
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 4.0e-25 117.9 87 67.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.0e-25 117.9 85 65.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.0e-25 117.9 85 65.9
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 4.0e-25 117.9 85 65.9
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.0e-25 117.9 83 61.4
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 4.0e-25 117.9 82 67.1
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 5.2e-25 117.5 84 64.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 6.7e-25 117.1 84 63.1
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 6.7e-25 117.1 82 67.1
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 2.0e-24 115.5 86 62.8
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 62.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 5.7e-24 114.0 86 61.6
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 7.5e-24 113.6 68 79.4
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 9.7e-24 113.2 82 64.6
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-23 112.8 76 69.7
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 86 60.5
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.7e-23 112.5 87 63.2
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 2.2e-23 112.1 69 88.4
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.8e-23 111.7 79 65.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.8e-23 111.7 97 67.0
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.8e-23 111.7 85 72.9
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 3.7e-23 111.3 74 66.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 3.7e-23 111.3 84 61.9
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 3.7e-23 111.3 84 61.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 8.3e-23 110.2 85 71.8
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 8.3e-23 110.2 68 75.0
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 8.3e-23 110.2 92 60.9
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.1e-22 109.8 65 76.9
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.1e-22 109.8 63 79.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.4e-22 109.4 84 60.7
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.8e-22 109.0 63 81.0
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.1e-22 108.2 73 64.4
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.1e-22 107.8 87 57.5
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 7.0e-22 107.1 76 67.1
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 7.0e-22 107.1 86 58.1
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 9.1e-22 106.7 95 54.7
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.2e-21 106.3 68 70.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.7e-21 105.1 99 53.5
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.5e-21 104.8 67 71.6
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.5e-21 104.4 87 55.2
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 5.9e-21 104.0 98 53.1
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 5.0e-20 100.9 86 54.7
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.5e-19 99.4 86 52.3
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.5e-19 98.6 67 70.1
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 5.5e-19 97.4 115 45.2
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.6e-18 95.9 84 61.9
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 2.1e-18 95.5 72 61.1
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.6e-18 94.7 74 63.5
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 4.0e-17 91.3 84 58.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 4.0e-17 91.3 71 60.6
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.2e-16 89.7 52 76.9
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.5e-16 89.4 85 52.9
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.6e-16 88.6 55 72.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 2.6e-16 88.6 53 73.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 3.4e-16 88.2 52 75.0
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.4e-16 87.8 85 55.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 7.5e-16 87.0 84 57.1
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.3e-15 86.3 47 85.1
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.2e-15 85.5 54 66.7
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 2.8e-15 85.1 80 45.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 3.7e-15 84.7 71 50.7
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.7e-15 84.7 43 90.7
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 8.3e-15 83.6 70 61.4
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.1e-14 83.2 56 69.6
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.1e-14 81.6 100 47.0
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 5.9e-13 77.4 97 43.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.7e-12 75.9 47 68.1
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 6.6e-12 73.9 54 59.3
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 5.5e-11 70.9 64 48.4
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.6e-10 69.3 72 50.0
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 4.0e-09 64.7 59 57.6
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 5.7e-08 60.8 59 52.5
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 3.7e-07 58.2 57 47.4
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.3e-07 57.4 116 38.8


User provided reference genes

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