Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1169.8 896 100.0
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 4.3e-231 805.4 881 75.7
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 4.3e-231 805.4 881 75.7
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.6e-228 796.2 886 77.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 6.2e-206 721.8 904 66.4
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 5.5e-194 682.2 908 69.5
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.2e-154 550.1 921 62.3
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.0e-144 516.9 960 53.1
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 1.1e-141 508.4 1022 53.4
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.6e-140 504.6 809 61.9
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.2e-137 492.7 932 59.4
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 3.1e-136 490.3 933 58.2
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.9e-134 483.0 967 54.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 8.3e-134 482.3 987 56.0
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.4e-133 481.5 923 57.2
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 2.4e-133 480.7 967 54.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.5e-130 470.7 916 55.8
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.9e-126 457.2 953 53.9
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 7.8e-124 449.1 939 59.2
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.3e-123 447.6 813 61.0
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.5e-122 444.1 955 51.8
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.3e-118 431.8 924 54.4
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.3e-118 431.8 807 57.1
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.4e-118 429.5 899 54.5
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.4e-117 427.6 939 52.4
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 3.2e-117 427.2 922 56.9
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 3.3e-114 417.2 1002 54.4
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.5e-111 408.3 901 58.4
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.3e-110 405.2 944 53.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.9e-109 401.4 969 51.6
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 7.1e-109 399.4 938 53.5
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 7.8e-108 396.0 950 51.6
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.1e-106 392.1 925 54.9
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 5.6e-106 389.8 921 55.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.3e-105 388.7 919 55.5
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 3.6e-105 387.1 844 55.2
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 5.3e-104 383.3 957 48.8
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.5e-103 381.7 923 55.3
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 7.6e-103 379.4 970 51.2
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.2e-102 377.9 878 48.6
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.9e-102 376.7 920 56.1
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 7.1e-101 372.9 928 49.1
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.7e-100 370.9 930 45.5
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 7.4e-98 362.8 947 49.2
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 3.7e-97 360.5 826 51.2
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.6e-95 354.4 925 54.4
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 5.8e-95 353.2 993 52.0
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 2.1e-92 344.7 915 46.4
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.1e-92 344.7 954 51.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 6.0e-92 343.2 929 49.8
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.3e-91 341.3 914 54.4
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.3e-91 341.3 981 49.7
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 8.7e-91 339.3 925 50.3
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 7.4e-90 336.3 955 48.1
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 4.0e-88 330.5 964 51.0
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.7e-86 325.1 932 52.1
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.7e-86 325.1 945 50.5
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 6.5e-86 323.2 222 79.3
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.6e-84 318.5 961 50.1
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.6e-84 318.5 916 47.9
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 2.7e-84 317.8 960 51.1
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 2.5e-82 311.2 991 42.3
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.5e-82 311.2 923 50.9
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 5.7e-82 310.1 918 39.9
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.6e-79 301.2 961 50.6
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.2e-78 298.1 294 61.6
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 6.5e-78 296.6 981 52.8
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 2.5e-77 294.7 900 44.9
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 7.9e-76 289.7 937 51.0
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.8e-75 288.5 277 63.5
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.5e-74 284.6 290 62.1
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 4.3e-74 283.9 222 72.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.8e-73 281.2 903 50.7
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 6.3e-73 280.0 282 61.3
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.8e-72 278.5 286 61.2
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.4e-71 274.2 945 52.3
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.4e-71 274.2 957 48.6
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 4.5e-71 273.9 964 41.8
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 6.5e-70 270.0 961 48.1
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.1e-69 269.2 298 58.4
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.9e-69 268.5 211 71.1
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 4.2e-69 267.3 946 48.2
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.0e-67 262.7 943 46.4
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 5.1e-67 260.4 225 68.4
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.5e-66 258.8 217 66.8
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 3.3e-66 257.7 223 67.7
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.8e-65 254.6 277 56.7
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 4.8e-65 253.8 163 81.6
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.1e-64 252.7 293 55.6
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 4.5e-63 247.3 258 59.3
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.3e-62 245.7 216 65.7
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.2e-61 241.1 209 65.6
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.6e-60 238.8 842 53.8
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 4.7e-60 237.3 142 84.5
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.0e-59 236.1 936 50.1
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.0e-59 236.1 140 85.0
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 5.2e-59 233.8 943 52.1
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.0e-58 231.9 137 86.1
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.3e-57 229.2 218 60.6
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.1e-56 226.1 295 51.2
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.1e-56 224.6 221 58.4
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-54 219.5 264 51.9
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-54 219.5 264 51.9
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 5.0e-54 217.2 293 57.3
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 8.5e-54 216.5 960 45.3
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.1e-53 216.1 319 49.2
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.5e-53 215.7 305 50.2
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.9e-53 215.3 964 49.9
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 9.4e-53 213.0 302 51.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.1e-52 211.8 131 79.4
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.1e-52 211.8 221 57.0
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.4e-51 209.1 248 55.2
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 6.7e-51 206.8 173 64.7
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.0e-50 205.3 168 69.0
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 2.2e-49 201.8 134 76.9
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 5.3e-48 197.2 169 65.1
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.0e-43 183.0 198 55.6
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 4.4e-34 151.0 182 51.1
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 6.3e-33 147.1 134 62.7
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 3.1e-32 144.8 182 50.0
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 4.5e-31 141.0 127 61.4
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 5.9e-31 140.6 434 42.2
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 1.8e-27 129.0 364 46.4
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 1.5e-21 109.4 147 44.2
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.3e-21 108.2 226 39.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.2e-20 106.3 86 70.9
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 4.0e-19 101.3 129 52.7
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.1e-13 83.2 57 73.7
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.3e-09 69.7 50 72.0
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 3.7e-09 68.2 433 37.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.1e-08 66.6 121 36.4
CARHR122470 Cardamine hirsuta HOM05D005166 ORTHO05D006120 6.0e-07 60.8 219 44.7
CDE06G2066 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 6.0e-07 60.8 170 40.0
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 3.0e-06 58.5 53 58.5
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 3.9e-06 58.2 53 58.5


User provided reference genes

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