Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 3.1e-165 585.1 304 100.0
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 8.3e-94 347.8 348 60.3
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.2e-87 327.4 303 64.4
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 8.6e-83 311.2 325 59.1
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 2.3e-80 303.1 367 54.8
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 9.9e-79 297.7 380 51.3
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 1.1e-77 294.3 321 55.1
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 4.1e-77 292.4 354 54.2
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.1e-74 284.3 360 53.9
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.9e-74 283.5 322 56.5
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 8.1e-73 278.1 331 55.9
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 8.1e-73 278.1 348 51.4
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 3.1e-72 276.2 305 57.0
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 8.9e-72 274.6 355 49.9
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 6.4e-70 268.5 321 55.5
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 2.1e-68 263.5 370 49.7
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.7e-68 263.1 334 51.2
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 4.6e-68 262.3 291 53.3
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.3e-67 260.8 383 49.3
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 2.8e-65 253.1 345 51.0
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 4.0e-64 249.2 345 48.4
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 1.2e-63 247.7 326 50.9
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 5.8e-63 245.4 317 50.8
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 5.8e-63 245.4 325 48.9
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 3.2e-61 239.6 407 44.0
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 6.0e-60 235.3 390 45.1
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.0e-59 234.6 436 41.1
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 2.3e-59 233.4 364 46.2
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 6.6e-59 231.9 420 40.5
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 9.6e-58 228.0 313 50.2
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 4.8e-57 225.7 329 48.3
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.1e-56 224.6 334 47.3
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 3.1e-56 223.0 330 47.9
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.5e-55 220.7 451 39.2
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.7e-54 217.2 336 46.7
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 1.7e-54 217.2 341 43.7
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 4.9e-54 215.7 330 47.3
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 4.9e-54 215.7 438 38.8
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 1.9e-53 213.8 396 42.4
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.9e-53 213.8 397 42.6
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 5.4e-53 212.2 366 42.1
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 7.1e-53 211.8 398 40.7
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.0e-51 208.0 426 39.4
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.0e-51 208.0 344 42.7
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 1.8e-51 207.2 308 49.0
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 1.8e-51 207.2 348 44.3
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.9e-50 203.8 331 42.9
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 6.2e-49 198.7 355 39.2
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.8e-48 197.2 426 38.5
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 6.9e-48 195.3 376 39.1
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 5.8e-47 192.2 508 35.8
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 5.8e-47 192.2 335 43.9
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 8.4e-46 188.3 243 50.2
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 1.2e-44 184.5 364 39.6
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 4.6e-44 182.6 435 37.2
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 1.8e-43 180.6 119 78.2
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 1.8e-43 180.6 119 78.2
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 2.3e-43 180.3 308 40.9
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.9e-43 179.5 394 36.8
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 6.7e-43 178.7 364 37.9
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 8.7e-43 178.3 368 37.5
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 1.5e-42 177.6 409 36.4
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 3.3e-42 176.4 412 38.3
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 4.3e-42 176.0 227 53.7
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.6e-41 174.1 325 41.8
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 2.8e-41 173.3 293 44.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.4e-40 171.0 313 40.9
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 9.0e-40 168.3 255 43.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 9.0e-40 168.3 340 38.5
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 2.0e-39 167.2 356 38.2
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 7.6e-39 165.2 303 42.6
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 7.6e-39 165.2 411 36.3
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 2.2e-38 163.7 400 37.5
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.2e-38 163.7 497 31.8
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 8.4e-38 161.8 436 32.8
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 1.4e-37 161.0 557 31.6
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.4e-37 161.0 350 35.1
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 1.9e-37 160.6 324 41.4
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 7.2e-37 158.7 374 35.8
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.2e-36 157.9 332 38.3
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.2e-36 157.9 332 38.3
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.2e-36 157.9 332 38.3
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.1e-36 157.1 373 36.5
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 4.6e-36 156.0 379 35.4
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 6.1e-36 155.6 343 36.4
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.0e-35 154.8 390 34.6
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 2.3e-35 153.7 382 36.1
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 2.3e-35 153.7 379 35.1
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 5.1e-35 152.5 250 44.8
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 1.1e-34 151.4 385 34.5
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.1e-34 151.4 382 34.8
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 2.5e-34 150.2 378 34.1
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 3.3e-34 149.8 379 34.3
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 9.7e-34 148.3 312 39.1
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 3.7e-33 146.4 296 38.5
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 4.8e-33 146.0 252 41.7
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 4.8e-33 146.0 385 34.5
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 1.1e-32 144.8 314 37.6
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 1.2e-31 141.4 354 33.6
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-31 140.2 127 69.3
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-31 140.2 127 69.3
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 4.5e-31 139.4 316 38.3
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 5.0e-30 136.0 300 36.0
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.4e-29 134.4 369 32.2
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 7.2e-29 132.1 258 38.8
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.7e-28 130.2 557 29.1
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 2.7e-28 130.2 241 43.2
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.6e-28 129.8 136 54.4
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.7e-27 125.6 535 29.5
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 2.5e-26 123.6 326 35.0
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 7.4e-26 122.1 118 61.0
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.3e-25 121.3 409 29.6
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 2.8e-25 120.2 146 50.7
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.1e-24 118.2 396 30.1
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 2.4e-24 117.1 415 31.1
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.1e-24 116.7 571 28.2
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 6.9e-24 115.5 277 35.0
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 9.1e-24 115.2 390 29.7
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.5e-23 114.4 557 27.6
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.7e-20 103.6 331 29.3
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.8e-19 100.9 416 28.1
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 3.3e-18 96.7 178 38.8
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 2.2e-17 94.0 223 35.9
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 3.7e-17 93.2 97 57.7
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 7.0e-16 89.0 253 34.0
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.2e-15 88.2 313 31.6
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 3.5e-15 86.7 290 33.1
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 1.0e-14 85.1 170 38.2
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 3.0e-11 73.6 246 30.1
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 4.4e-10 69.7 272 28.7
ECA236G4356 Erigeron canadensis HOM05D000034 ORTHO05D000037 2.7e-07 60.5 272 29.8
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 3.5e-07 60.1 202 31.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 3.5e-07 60.1 250 30.0
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 4.5e-07 59.7 202 31.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.0e-06 58.5 181 30.4
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-06 57.8 191 31.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.2e-06 57.4 129 33.3
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.8e-06 56.6 224 29.5
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 6.5e-06 55.8 133 31.6
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 8.5e-06 55.5 151 30.5
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 8.5e-06 55.5 81 43.2


User provided reference genes

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