Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.8e-238 827.8 424 100.0
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 8.8e-219 763.5 426 92.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-203 713.4 424 85.1
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.4e-203 713.0 396 89.4
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.4e-201 704.1 389 90.0
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.4e-200 702.2 424 84.4
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.4e-200 701.0 424 84.0
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.5e-197 693.0 424 82.5
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 8.1e-196 687.2 425 81.6
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.1e-195 686.8 424 81.1
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.4e-195 686.4 424 81.6
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.8e-195 686.0 428 82.2
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 4.0e-195 684.9 424 81.1
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-194 682.9 429 81.6
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.0e-194 682.6 429 80.9
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 5.8e-194 681.0 426 81.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 5.8e-194 681.0 425 80.5
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.7e-193 678.3 424 80.7
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 4.9e-193 677.9 426 81.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.9e-193 677.9 428 81.1
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.1e-192 676.8 424 80.4
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.4e-192 675.6 428 80.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.2e-192 675.2 424 80.7
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 7.1e-192 674.1 424 80.4
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 7.1e-192 674.1 426 80.8
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.6e-191 672.9 428 79.2
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 2.7e-191 672.2 425 80.5
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 3.5e-191 671.8 425 80.2
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 3.5e-191 671.8 425 80.5
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 4.6e-191 671.4 424 80.9
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 6.0e-191 671.0 430 79.8
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 7.8e-191 670.6 424 80.2
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 7.8e-191 670.6 426 80.3
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 2.3e-190 669.1 428 79.7
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 2.3e-190 669.1 424 80.2
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 3.9e-190 668.3 425 80.0
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 8.6e-190 667.2 428 79.7
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.1e-189 666.8 392 84.4
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.5e-189 666.4 430 82.1
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.5e-189 666.4 424 80.2
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 3.3e-189 665.2 424 80.2
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 3.3e-189 665.2 424 79.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.6e-189 664.5 426 81.0
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 5.6e-189 664.5 424 79.7
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 7.3e-189 664.1 426 79.1
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 7.3e-189 664.1 426 79.8
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.6e-188 662.9 426 79.8
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.1e-188 662.5 425 80.0
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 3.6e-188 661.8 424 79.5
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.6e-188 661.8 424 79.2
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.6e-188 661.8 424 79.2
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 4.7e-188 661.4 427 79.4
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.0e-187 658.3 367 89.1
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.0e-187 658.3 426 78.9
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.2e-187 657.9 395 82.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.5e-186 656.4 441 76.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 5.8e-186 654.4 421 77.9
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 9.9e-186 653.7 426 78.6
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 8.4e-185 650.6 427 78.5
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.1e-184 650.2 429 77.9
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.9e-184 649.4 405 80.2
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.9e-184 649.4 421 77.9
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.9e-184 649.4 392 82.4
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.1e-183 646.0 406 81.5
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 3.5e-183 645.2 408 81.4
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.5e-183 645.2 424 78.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 4.6e-183 644.8 431 77.5
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.0e-182 643.7 406 79.8
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.0e-182 643.7 430 77.2
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.7e-182 642.9 404 81.2
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.0e-182 642.1 404 80.4
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 3.0e-182 642.1 430 77.2
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 3.0e-182 642.1 407 80.8
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.7e-182 640.6 424 76.2
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 4.3e-181 638.3 431 78.9
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 5.6e-181 637.9 420 77.6
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.2e-180 636.7 411 80.8
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.7e-180 634.8 424 75.9
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 6.2e-180 634.4 392 80.1
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 4.0e-179 631.7 397 81.1
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 5.2e-179 631.3 415 78.6
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.5e-178 629.8 406 79.8
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 2.6e-178 629.0 427 75.2
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 3.4e-178 628.6 429 75.3
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.4e-178 628.2 415 78.1
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 9.9e-178 627.1 392 80.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.3e-177 626.7 424 75.2
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.7e-177 626.3 427 75.2
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.7e-177 626.3 427 75.2
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.7e-177 626.3 411 77.6
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.9e-177 624.8 434 74.2
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.9e-177 624.8 432 74.8
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 8.4e-177 624.0 427 74.9
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 8.4e-177 624.0 431 74.0
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-176 622.9 431 75.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.1e-175 619.4 431 74.2
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.7e-175 619.0 430 75.6
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.0e-175 617.8 431 74.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 7.8e-175 617.5 408 76.5
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.0e-174 617.1 424 74.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.3e-174 616.7 431 74.0
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 3.0e-174 615.5 424 74.3
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 6.6e-174 614.4 427 73.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 1.1e-173 613.6 426 73.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-173 613.6 426 73.9
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.9e-173 612.8 427 73.5
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.3e-173 611.7 427 73.3
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 7.3e-173 610.9 424 72.9
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 7.3e-173 610.9 424 72.9
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 7.3e-173 610.9 424 72.9
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.8e-172 609.0 428 73.6
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.6e-172 608.6 424 73.6
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 4.8e-172 608.2 424 72.9
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 4.8e-172 608.2 427 73.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-171 607.1 424 73.1
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 5.3e-171 604.7 411 76.4
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 9.0e-171 604.0 427 72.1
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.5e-170 603.2 429 72.5
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 2.6e-170 602.4 335 88.1
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 2.6e-170 602.4 354 84.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 5.8e-170 601.3 424 73.1
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.7e-169 599.7 380 79.5
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 6.4e-169 597.8 421 72.4
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 8.4e-169 597.4 454 72.0
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.0e-166 589.0 473 66.2
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 8.7e-166 587.4 424 73.3
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 9.6e-165 583.9 392 74.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.9e-163 577.8 442 70.1
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.8e-161 572.0 379 76.8
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 7.1e-160 567.8 424 69.8
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 5.6e-157 558.1 320 86.6
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 6.2e-156 554.7 374 71.4
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 6.9e-155 551.2 438 69.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 3.4e-154 548.9 411 71.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.2e-153 546.2 322 82.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 3.2e-152 542.3 400 67.8
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 9.3e-152 540.8 425 65.4
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.4e-147 526.2 384 68.5
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 3.4e-146 522.3 417 67.9
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.9e-144 516.5 366 73.2
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 5.1e-142 508.4 435 62.3
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.7e-140 503.4 370 71.4
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 4.2e-136 488.8 430 58.4
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 3.9e-134 482.3 399 66.4
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.4e-133 478.8 401 61.8
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.5e-128 461.8 370 65.9
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 7.2e-128 461.5 332 72.3
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.1e-127 459.9 424 58.7
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.2e-120 436.0 241 89.6
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.0e-118 429.1 335 66.9
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.7e-111 406.4 271 73.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.2e-106 391.0 231 82.7
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.5e-104 383.3 211 91.0
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.3e-96 355.1 406 48.5
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.0e-94 351.3 383 50.1
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 3.2e-91 339.7 387 49.4
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.2e-85 321.2 273 58.6
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.7e-84 317.4 354 54.8
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.9e-83 313.9 196 77.6
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 3.6e-71 273.1 151 87.4
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.4e-67 260.4 425 43.1
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.3e-65 254.6 222 61.7
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.5e-64 251.1 305 44.9
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 5.3e-62 242.7 302 46.4
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 5.4e-59 232.6 214 58.9
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.1e-56 224.9 244 47.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.1e-50 204.1 120 79.2
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.3e-49 200.7 182 59.3
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.8e-33 147.9 75 94.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.5e-32 144.1 134 61.2
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.8e-25 121.3 69 84.1
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 5.7e-24 116.3 88 64.8
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.5e-21 108.2 75 68.0
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.5e-20 102.8 54 85.2
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 7.9e-18 95.9 61 73.8
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 3.9e-17 93.6 125 48.0
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 2.8e-15 87.4 95 49.5
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.4e-14 85.1 74 58.1
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.5e-13 81.6 123 42.3
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.7e-12 78.2 60 63.3
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.3e-08 63.9 70 50.0
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 4.8e-07 60.1 55 56.4
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 5.3e-06 56.6 36 72.2
TPR.G39825 Trifolium pratense HOM05D003740 ORTHO05D411371 5.3e-06 56.6 33 78.8
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 7.0e-06 56.2 35 68.6


User provided reference genes

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