Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 5246.8 2600 100.0
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 3709.8 2554 72.2
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 3471.4 2495 70.2
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 3389.4 2560 67.3
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 3288.4 2621 64.2
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 3180.6 2571 64.0
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 3139.0 2573 62.6
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 3112.0 2650 61.0
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 3108.5 2577 62.0
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 3085.0 2568 62.1
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 3071.2 2565 61.1
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3061.6 2565 61.0
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 3059.2 2571 61.2
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3050.4 2567 60.8
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 3047.3 2599 61.6
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3042.7 2565 60.7
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3039.6 2560 60.8
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3039.2 2560 60.7
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 3026.9 2553 61.3
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2983.0 2591 59.6
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2981.8 2566 60.1
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2946.8 2567 59.3
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2946.8 2571 59.2
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2946.4 2571 59.0
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2940.6 2571 58.9
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2930.6 2587 58.7
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2921.7 2420 62.2
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2917.9 2566 58.7
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2879.7 2549 58.3
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2865.9 2562 57.6
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2859.7 2558 58.0
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2858.6 2561 57.6
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2843.5 2574 57.6
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2835.4 2570 57.9
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2833.5 2570 57.7
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2815.4 2567 57.2
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2744.5 2553 55.6
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2732.2 2560 55.7
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2724.1 2595 55.6
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2713.7 2557 55.4
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2693.3 2570 54.9
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2667.5 2566 54.4
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2662.5 2547 56.5
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2642.5 2567 55.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2641.3 2557 54.1
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2641.3 2552 53.9
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2633.2 2557 54.0
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2621.3 2567 54.8
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2617.0 2560 54.3
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2610.5 2566 54.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2602.0 2553 54.3
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2586.6 2582 52.5
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2574.3 2585 53.7
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2568.5 2592 52.9
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2548.1 2543 52.7
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2543.8 2594 52.7
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2528.4 2571 52.9
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2493.4 2560 52.7
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2485.3 2578 52.3
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2473.7 2572 52.0
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2461.4 2410 53.9
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2439.8 2419 54.4
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2420.2 2570 51.1
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2392.5 2579 50.9
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2379.4 2566 51.2
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 2360.9 2538 51.6
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2348.5 2567 49.7
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2338.5 2579 49.2
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2325.8 2582 49.2
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2301.9 2568 49.3
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2300.4 2571 49.4
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2298.9 1939 61.2
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2298.1 2568 49.2
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2292.7 2572 49.9
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2290.4 2568 49.1
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2287.7 2569 49.1
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2228.4 2561 48.3
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 2228.4 2562 47.9
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1907.9 1882 53.4
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1904.4 1975 52.0
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1872.1 2573 41.8
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1866.3 1358 68.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1850.5 1932 51.5
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1840.9 2570 42.3
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1763.0 2593 41.0
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1724.1 1325 64.7
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1723.4 1356 64.5
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1545.4 1359 57.8
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1466.8 1538 52.5
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1443.3 1578 51.6
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1442.9 1533 52.6
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1401.0 1067 66.7
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1381.3 1106 65.0
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1206.8 1178 53.1
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1193.7 1065 58.5
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1193.7 1065 58.5
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 0.0e+00 1142.5 1358 47.4
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 0.0e+00 1138.3 2001 38.5
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1134.0 1089 55.5
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1098.2 2751 30.2
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.1e-258 898.7 1042 45.8
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.7e-249 867.5 716 60.5
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.4e-234 816.6 569 73.8
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 8.6e-232 809.3 1220 39.8
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.1e-221 775.8 1747 32.3
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 3.0e-216 757.7 489 74.4
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.6e-215 752.7 556 68.7
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.4e-213 748.0 589 62.5
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.5e-196 692.2 631 56.1
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 3.2e-186 657.9 764 49.7
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 9.0e-181 639.8 1111 38.3
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.3e-175 621.3 2068 27.6
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 3.7e-166 591.3 459 67.5
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.6e-164 585.1 750 41.6
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.4e-149 535.4 519 58.8
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 2.7e-140 505.4 429 59.0
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 4.7e-137 494.6 458 50.9
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.1e-130 473.4 953 33.9
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 3.0e-123 448.7 294 74.8
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.1e-112 413.7 1789 25.7
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 2.8e-105 389.0 231 81.8
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 3.4e-95 355.5 382 50.5
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.1e-84 319.7 197 79.7
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 7.6e-79 301.2 230 65.7
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.3e-78 300.4 179 79.3
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 9.3e-77 294.3 633 33.5
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.7e-73 282.3 270 56.3
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.6e-71 274.6 225 60.9
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 6.7e-67 261.5 200 61.5
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 8.8e-59 234.6 454 40.1
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.3e-54 220.7 415 38.6
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 4.2e-53 215.7 219 49.3
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 9.1e-48 198.0 564 29.8
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.6e-47 197.2 231 45.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 1.7e-46 193.7 120 74.2
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.0e-43 184.5 281 37.7
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.3e-42 179.5 121 72.7
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 9.1e-40 171.4 114 74.6
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.0e-38 167.9 202 42.6
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 5.0e-38 165.6 182 44.5
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.6e-36 160.6 504 28.0
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 5.4e-32 145.6 259 34.7
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.2e-31 144.4 103 73.8
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 2.7e-31 143.3 102 71.6
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.5e-30 138.7 109 59.6
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 5.5e-29 135.6 234 35.9
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-28 134.0 109 58.7
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.6e-28 134.0 231 35.9
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.0e-27 131.3 88 76.1
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 4.4e-26 125.9 70 81.4
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.4e-24 120.9 121 53.7
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 2.5e-21 110.2 143 40.6
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 3.0e-19 103.2 117 49.6
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 5.8e-18 99.0 153 43.1
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 1.4e-16 94.4 124 41.9
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.0e-14 86.7 301 26.2
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 2.5e-13 83.6 53 73.6
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.6e-12 79.7 120 35.8
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 6.2e-12 79.0 77 49.4
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 8.0e-12 78.6 105 37.1
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.8e-11 77.4 118 43.2
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 4.0e-11 76.3 57 70.2
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 7.0e-08 65.5 92 37.0
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 3.5e-07 63.2 92 35.9
Dinv32250 Davidia involucrata HOM05D004435 ORTHO05D005103 8.6e-06 58.5 44 59.1


User provided reference genes

Program Settings