Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.5e-194 681.4 339 100.0
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 2.6e-120 436.0 225 90.7
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.2e-117 427.2 226 88.5
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.7e-117 426.0 229 87.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.6e-117 425.2 230 86.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.3e-116 423.7 225 87.1
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.7e-116 423.3 222 88.7
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.5e-115 420.2 228 85.5
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 3.3e-115 419.1 223 87.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.3e-115 419.1 224 88.4
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.3e-115 419.1 229 85.6
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.3e-115 419.1 238 83.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 7.3e-115 417.9 221 88.2
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 7.3e-115 417.9 237 84.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 9.5e-115 417.5 224 86.6
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.2e-114 417.2 232 84.9
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.2e-114 417.2 236 84.3
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.6e-114 416.8 231 85.7
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.6e-114 416.8 222 86.9
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.6e-114 416.8 223 87.4
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 2.1e-114 416.4 221 87.8
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 3.6e-114 415.6 232 85.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 6.2e-114 414.8 221 87.3
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.2e-114 414.8 222 87.8
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 8.1e-114 414.5 227 84.1
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 8.1e-114 414.5 228 86.0
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.8e-113 413.3 222 86.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.3e-113 412.9 223 86.5
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.3e-113 412.9 222 86.5
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 2.3e-113 412.9 222 86.9
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.3e-113 412.9 223 86.1
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 4.0e-113 412.1 233 83.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 5.2e-113 411.8 223 85.7
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 6.8e-113 411.4 221 86.9
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 6.8e-113 411.4 231 84.4
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 8.9e-113 411.0 231 85.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 8.9e-113 411.0 226 86.3
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 8.9e-113 411.0 226 86.7
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.2e-112 410.6 221 85.5
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.2e-112 410.6 221 85.5
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.2e-112 410.6 223 85.7
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.5e-112 410.2 221 87.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 2.6e-112 409.5 221 85.1
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.4e-112 409.1 226 85.4
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.4e-112 409.1 223 86.5
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 5.8e-112 408.3 224 84.4
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 7.5e-112 407.9 221 86.4
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.3e-111 407.1 221 84.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.3e-111 407.1 222 83.8
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.7e-111 406.8 219 86.8
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.2e-111 406.4 245 78.8
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.2e-111 406.4 221 84.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.2e-111 406.4 221 88.2
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.2e-111 406.4 223 83.9
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 2.9e-111 406.0 223 85.2
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.7e-111 405.6 223 84.8
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 3.7e-111 405.6 255 76.1
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 4.9e-111 405.2 221 85.1
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 6.4e-111 404.8 226 83.2
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 6.4e-111 404.8 223 84.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 8.3e-111 404.4 221 85.1
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-110 404.1 221 85.1
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 2.4e-110 402.9 227 82.4
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.4e-110 402.9 221 85.1
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.2e-110 402.5 227 82.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 4.1e-110 402.1 219 86.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.1e-110 402.1 221 84.6
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.4e-110 401.7 221 84.6
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.4e-110 401.7 221 84.2
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 5.4e-110 401.7 221 85.5
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 5.4e-110 401.7 224 85.7
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 7.1e-110 401.4 251 77.7
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 9.2e-110 401.0 222 84.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 9.2e-110 401.0 221 84.6
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.6e-109 400.2 222 85.1
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.1e-109 399.8 223 83.9
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.1e-109 399.8 221 84.6
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.1e-109 399.8 228 82.5
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 7.8e-109 397.9 221 84.2
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.3e-108 397.1 208 88.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.3e-108 397.1 248 78.2
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 2.3e-108 396.4 222 84.2
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.0e-108 396.0 230 80.9
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 3.0e-108 396.0 223 83.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 5.1e-108 395.2 220 83.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 5.1e-108 395.2 220 83.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 5.1e-108 395.2 220 83.2
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 6.6e-108 394.8 208 88.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 8.6e-108 394.4 221 84.2
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-107 393.7 220 82.7
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.5e-107 393.7 221 82.8
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.9e-107 393.3 213 85.4
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.9e-107 393.3 220 82.7
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.5e-107 392.9 220 83.2
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.3e-107 392.1 221 81.9
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 4.3e-107 392.1 221 81.9
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 4.3e-107 392.1 220 82.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 7.3e-107 391.3 220 81.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.2e-106 390.6 223 81.6
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.1e-106 389.8 222 82.9
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.8e-106 389.4 222 80.2
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 6.2e-106 388.3 220 81.8
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 6.2e-106 388.3 220 80.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 6.2e-106 388.3 224 79.5
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 8.1e-106 387.9 221 81.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 8.1e-106 387.9 221 81.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.1e-105 387.5 221 81.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.4e-105 387.1 222 79.7
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.2e-105 385.2 283 68.2
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 8.9e-105 384.4 220 81.4
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 8.9e-105 384.4 220 81.4
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 8.9e-105 384.4 216 81.9
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-104 383.6 220 80.9
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 7.6e-104 381.3 221 80.1
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.4e-102 377.1 216 79.6
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.4e-102 376.3 221 81.9
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 2.4e-97 359.8 208 81.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-96 357.5 218 72.9
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 7.1e-94 348.2 228 73.7
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 4.8e-90 335.5 228 67.1
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.1e-89 334.3 219 69.9
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 4.9e-87 325.5 213 68.5
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.6e-85 320.5 219 67.1
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.0e-80 303.5 163 88.3
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 5.8e-80 302.0 164 88.4
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.2e-78 296.2 169 78.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.6e-74 283.9 153 85.6
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.8e-73 280.4 163 76.7
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 5.8e-72 275.4 221 58.4
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.6e-64 250.0 167 71.9
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 8.5e-63 245.0 128 84.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 7.2e-62 241.9 218 56.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.4e-60 237.7 216 53.7
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-58 231.1 129 80.6
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 4.5e-56 222.6 151 75.5
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 9.4e-54 214.9 209 48.8
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 2.3e-52 210.3 111 89.2
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.3e-49 199.1 112 78.6
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 4.5e-48 196.1 115 76.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.4e-43 179.5 130 60.0
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 7.7e-40 168.7 88 81.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 4.7e-37 159.5 102 74.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 9.7e-35 151.8 218 38.5
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 6.3e-34 149.1 97 79.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.0e-28 130.2 75 84.0
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.0e-27 127.5 78 84.6
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 7.5e-27 125.6 134 47.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-26 124.8 66 86.4
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 6.3e-26 122.5 108 56.5
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.1e-25 121.7 61 91.8
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.8e-21 107.1 59 74.6
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 8.0e-21 105.5 61 85.2
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.4e-20 104.8 61 85.2
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 6.8e-20 102.4 61 82.0
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 8.9e-20 102.1 54 85.2
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 7.5e-19 99.0 64 76.6
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 2.8e-18 97.1 64 76.6
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 6.6e-15 85.9 54 81.5
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.3e-14 83.6 128 43.0
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.8e-13 80.5 100 44.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.8e-12 77.8 51 72.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.4e-09 67.4 39 74.4
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 7.8e-08 62.4 43 76.7
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 6.6e-07 59.3 35 80.0


User provided reference genes

Program Settings