Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 0.0e+00 1728.0 868 100.0
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.5e-236 822.8 829 56.1
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 5.2e-234 815.1 840 55.1
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.4e-208 728.0 775 54.3
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.4e-207 727.2 775 54.3
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 8.5e-200 701.4 854 48.6
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 2.5e-191 673.3 860 47.7
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 2.6e-188 663.3 830 47.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 1.2e-172 611.3 857 45.7
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 7.2e-167 592.0 852 43.5
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.6e-166 590.9 867 43.4
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 1.5e-159 567.8 854 43.4
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 4.9e-155 552.7 880 41.6
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 7.8e-153 545.4 857 40.1
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 2.3e-152 543.9 851 40.5
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 2.8e-150 537.0 831 41.6
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 2.7e-145 520.4 854 39.9
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.6e-145 519.6 845 40.2
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 4.4e-140 503.1 833 40.2
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 3.6e-134 483.4 857 39.0
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 6.8e-133 479.2 883 38.6
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 5.4e-130 469.5 983 33.9
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.6e-129 466.5 768 41.0
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 6.2e-126 456.1 870 37.8
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 1.3e-123 448.4 870 37.5
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.8e-123 446.8 900 36.2
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.7e-120 438.0 900 36.2
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 5.1e-120 436.4 425 53.6
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.6e-118 430.3 797 38.6
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 4.7e-118 429.9 847 36.0
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 6.4e-115 419.5 846 36.2
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 1.3e-112 411.8 856 34.7
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 9.0e-109 399.1 898 32.6
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.6e-108 396.0 840 35.0
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.9e-107 394.0 814 37.1
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 1.4e-106 391.7 817 34.3
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.8e-104 384.8 1066 30.7
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.9e-104 383.6 870 34.0
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 3.9e-104 383.6 809 35.2
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 5.1e-104 383.3 817 35.9
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 4.8e-102 376.7 819 32.7
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.2e-100 372.1 833 35.3
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.5e-100 371.7 822 33.8
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 1.4e-98 365.2 900 32.4
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.0e-96 359.0 820 33.4
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 2.3e-96 357.8 803 34.9
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 4.3e-95 353.6 825 33.1
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 1.3e-94 352.1 846 32.7
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.8e-93 348.2 821 32.0
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 6.9e-93 346.3 867 32.3
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.5e-92 345.1 852 32.3
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 4.5e-92 343.6 828 31.6
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.7e-91 341.7 756 34.4
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 1.9e-90 338.2 915 30.4
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 1.9e-90 338.2 835 31.4
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 7.1e-90 336.3 849 31.0
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 2.7e-89 334.3 833 33.1
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 4.6e-89 333.6 843 31.2
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 3.0e-88 330.9 261 61.7
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 8.7e-88 329.3 842 32.8
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.9e-87 328.2 695 36.5
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.9e-87 328.2 759 33.2
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 2.5e-87 327.8 817 31.8
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 3.7e-86 323.9 836 31.1
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 4.5e-84 317.0 815 31.8
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.0e-83 315.8 804 32.2
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 5.0e-83 313.5 893 29.7
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 6.5e-83 313.2 906 30.8
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.6e-81 308.5 827 31.1
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 2.1e-81 308.1 647 34.0
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 2.3e-80 304.7 306 51.0
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.1e-79 302.4 236 62.3
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 7.4e-79 299.7 848 29.8
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 9.7e-79 299.3 883 30.7
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 3.1e-77 294.3 848 31.1
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 4.1e-77 293.9 808 30.3
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 3.4e-76 290.8 810 29.9
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 3.8e-75 287.3 883 29.0
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 3.8e-75 287.3 258 55.4
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 5.0e-75 287.0 868 29.1
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 6.5e-75 286.6 841 28.8
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 3.2e-74 284.3 907 30.0
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 5.1e-72 276.9 273 53.1
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.5e-71 275.4 285 48.4
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 2.6e-71 274.6 893 28.6
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.3e-71 274.2 233 55.4
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.3e-71 274.2 1054 26.6
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.1e-69 269.2 903 28.0
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 9.1e-69 266.2 914 28.1
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 9.1e-69 266.2 914 28.1
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.2e-68 265.8 236 53.4
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.6e-68 264.6 770 30.5
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 3.8e-67 260.8 843 28.9
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.4e-66 258.8 802 28.4
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 2.2e-62 245.0 781 28.2
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 3.7e-62 244.2 338 48.8
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.3e-62 243.4 232 53.0
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 8.2e-62 243.0 834 28.2
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.5e-58 232.3 223 47.5
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.2e-57 229.2 324 48.1
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 6.1e-57 226.9 308 38.6
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 5.7e-55 220.3 222 47.3
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 1.2e-47 196.1 781 26.4
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.6e-47 194.9 217 45.2
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 6.1e-41 173.7 332 36.4
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.7e-35 155.6 264 40.9
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 6.8e-24 117.1 233 31.8
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 1.5e-15 89.4 261 24.1
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 3.4e-15 88.2 219 26.0
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.2e-13 81.6 144 42.4
Oeu028720.1 Olea europaea HOM05D004942 ORTHO05D005687 4.1e-13 81.3 291 29.9
PSO541G2259 Papaver somniferum HOM05D001049 ORTHO05D049301 6.4e-06 57.4 95 38.9
Actinidia16149 Actinidia chinensis HOM05D057958 ORTHO05D005687 8.4e-06 57.0 55 49.1
Actinidia26534 Actinidia chinensis HOM05D057958 ORTHO05D005687 8.4e-06 57.0 55 49.1


User provided reference genes

Program Settings