Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 7.2e-126 454.1 267 100.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.6e-77 293.5 320 62.8
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 2.1e-77 293.1 302 72.5
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.4e-75 285.4 319 62.1
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 1.3e-71 273.9 324 59.9
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.3e-71 273.9 322 59.9
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 5.6e-70 268.5 325 61.2
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.3e-70 268.1 320 59.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.3e-70 268.1 320 59.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.1e-68 264.2 319 60.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-68 264.2 320 59.1
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 4.0e-68 262.3 325 60.3
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 4.0e-68 262.3 324 54.3
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.5e-67 258.8 317 53.0
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-65 254.2 318 58.5
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.4e-65 253.8 321 53.3
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.9e-65 253.4 331 57.4
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.3e-65 251.1 325 54.2
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.9e-64 248.1 315 59.0
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.9e-63 245.7 331 56.2
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.5e-62 243.8 291 60.1
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.1e-61 240.0 302 56.6
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 2.8e-61 239.6 316 56.3
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.7e-61 239.2 332 51.5
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 4.8e-61 238.8 320 57.8
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 6.2e-61 238.4 300 60.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 5.3e-60 235.3 312 56.7
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-59 233.4 328 48.2
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 4.9e-58 228.8 315 57.1
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 4.9e-58 228.8 340 54.4
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 4.2e-57 225.7 332 52.1
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 7.9e-56 221.5 327 47.4
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.8e-55 220.3 319 46.4
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 3.3e-54 216.1 293 57.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 5.7e-54 215.3 349 51.3
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.1e-53 213.4 330 53.0
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 8.2e-53 211.5 284 58.1
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 8.2e-53 211.5 284 58.1
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.9e-52 208.4 268 61.6
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.5e-51 207.2 294 52.4
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.0e-50 204.5 285 47.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.5e-49 199.9 256 50.0
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 7.2e-49 198.4 284 58.5
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 7.2e-49 198.4 284 58.5
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 7.2e-49 198.4 345 49.6
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.2e-49 198.4 357 49.9
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 7.2e-49 198.4 296 54.1
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.1e-48 196.8 272 48.5
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.5e-48 196.1 341 48.4
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.5e-48 196.1 269 58.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.8e-47 193.7 325 48.6
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.1e-46 191.0 305 48.2
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-46 189.5 266 56.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.8e-45 185.7 312 53.5
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 8.2e-45 184.9 309 47.6
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.4e-44 184.1 339 49.6
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 9.0e-44 181.4 290 54.8
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.0e-43 180.3 263 49.0
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 5.9e-43 178.7 351 47.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.2e-42 176.8 276 51.1
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.9e-42 176.4 345 47.2
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.2e-41 172.6 319 40.8
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.1e-40 170.2 283 50.5
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.6e-40 169.1 311 50.5
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.4e-39 167.5 324 45.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.4e-39 167.5 303 44.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.1e-39 165.6 336 41.4
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.3e-38 162.9 331 41.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.3e-37 161.0 333 41.1
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-37 161.0 333 41.1
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.2e-37 160.2 301 43.2
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 3.7e-37 159.5 370 43.2
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.1e-36 157.9 324 41.7
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.8e-36 157.1 312 41.3
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.8e-36 157.1 331 47.4
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 2.4e-36 156.8 167 72.5
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.0e-35 153.7 351 37.6
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.6e-35 153.3 335 41.8
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.4e-35 152.9 369 43.1
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 4.5e-35 152.5 334 42.5
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 7.7e-35 151.8 329 38.6
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.0e-34 151.4 321 45.5
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 2.2e-34 150.2 326 43.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.2e-34 150.2 326 39.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.2e-34 150.2 326 39.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.2e-34 150.2 326 39.0
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.9e-34 149.8 311 47.6
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 3.8e-34 149.4 322 46.3
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 5.5e-33 145.6 346 36.7
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.1e-32 143.7 288 46.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 6.1e-32 142.1 321 36.1
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.4e-31 141.0 313 46.6
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 6.7e-31 138.7 277 43.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 6.7e-31 138.7 339 40.7
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 5.7e-30 135.6 330 35.8
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 7.4e-30 135.2 329 42.6
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.7e-30 134.8 332 35.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.8e-29 132.5 293 42.3
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 8.2e-29 131.7 320 41.9
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.4e-28 131.0 334 35.3
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 4.1e-28 129.4 302 39.4
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.3e-28 129.0 274 38.7
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.9e-26 123.2 310 45.2
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 3.8e-26 122.9 335 40.3
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 5.0e-26 122.5 312 34.9
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 6.5e-26 122.1 303 44.9
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 8.5e-26 121.7 322 36.3
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.9e-25 120.6 309 46.0
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.5e-25 120.2 158 70.3
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.7e-24 116.7 97 67.0
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.1e-24 115.5 311 42.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.0e-23 114.8 324 35.8
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-23 114.4 266 37.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.8e-23 114.0 337 33.8
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.8e-23 114.0 325 34.5
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 2.3e-23 113.6 340 34.1
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.3e-23 113.6 264 36.7
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 4.4e-22 109.4 312 40.7
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.4e-22 109.4 280 46.1
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 5.7e-22 109.0 262 47.3
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 7.5e-22 108.6 337 40.9
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 4.8e-21 105.9 273 33.3
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 4.8e-21 105.9 340 33.5
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 6.3e-21 105.5 314 36.0
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.1e-20 104.8 307 34.5
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.1e-20 104.8 321 34.3
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 4.1e-20 102.8 334 34.7
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 5.3e-20 102.4 334 33.8
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 5.3e-20 102.4 334 33.8
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 5.3e-20 102.4 285 42.5
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 9.1e-20 101.7 331 32.6
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 9.1e-20 101.7 334 33.8
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 9.1e-20 101.7 331 33.2
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 9.1e-20 101.7 336 33.9
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.6e-19 100.9 331 34.4
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.5e-19 99.8 336 34.5
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 7.7e-19 98.6 334 32.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.9e-17 94.0 327 31.5
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 5.5e-17 92.4 331 32.0
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 7.2e-17 92.0 324 38.9
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 4.0e-15 86.3 391 30.9
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.5e-14 84.3 273 40.7
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 1.3e-10 71.2 46 71.7
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.9e-09 67.4 69 55.1
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.5e-09 67.0 69 55.1
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.4e-09 65.1 67 55.2
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 2.1e-08 63.9 274 30.3
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 2.7e-08 63.5 242 32.6
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.8e-07 60.8 46 65.2
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 8.8e-07 58.5 320 31.2
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.5e-06 57.8 319 29.5
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.6e-06 57.0 106 37.7
Dinv25581 Davidia involucrata HOM05D001488 ORTHO05D001456 3.4e-06 56.6 171 32.2


User provided reference genes

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