Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.3e-93 345.5 173 100.0
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.2e-83 312.4 173 86.7
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 3.2e-82 308.5 173 86.1
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 4.2e-82 308.1 172 86.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 7.1e-82 307.4 172 86.6
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.6e-81 304.7 173 83.2
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 6.0e-81 304.3 172 86.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.0e-81 304.3 172 86.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 7.8e-81 303.9 173 86.7
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 7.8e-81 303.9 172 84.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.0e-80 303.5 172 84.3
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.7e-80 302.8 173 82.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.0e-80 302.0 172 85.5
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.9e-80 301.6 173 81.5
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 8.7e-80 300.4 173 82.7
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.1e-79 300.1 173 82.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.9e-79 299.3 172 84.9
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.9e-79 299.3 172 84.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.5e-79 298.9 172 84.3
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 9.6e-79 297.0 172 82.6
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 9.6e-79 297.0 172 83.1
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.3e-78 296.6 173 85.5
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.3e-78 296.6 172 82.6
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.6e-78 296.2 172 81.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.6e-78 296.2 172 83.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.6e-78 295.0 172 82.6
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 3.6e-78 295.0 172 82.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.8e-78 294.7 170 84.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.8e-78 294.7 172 82.6
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 4.8e-78 294.7 172 83.1
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 8.1e-78 293.9 172 81.4
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 8.1e-78 293.9 172 83.1
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.1e-77 293.5 173 81.5
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.4e-77 293.1 172 81.4
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.4e-77 293.1 172 83.7
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.4e-77 293.1 170 83.5
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.4e-77 293.1 172 81.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.8e-77 292.7 172 82.0
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.4e-77 292.4 195 76.9
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.1e-77 292.0 172 81.4
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 4.0e-77 291.6 173 80.3
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 5.3e-77 291.2 172 79.7
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 5.3e-77 291.2 172 81.4
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.0e-77 290.4 172 84.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 9.0e-77 290.4 172 82.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.2e-76 290.0 173 82.1
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.2e-76 290.0 170 81.8
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-76 290.0 170 82.9
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.5e-76 289.7 172 81.4
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.0e-76 289.3 172 79.1
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 2.0e-76 289.3 172 83.1
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.0e-76 289.3 173 79.8
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 3.4e-76 288.5 170 84.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.4e-76 288.1 172 83.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 7.6e-76 287.3 172 81.4
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.3e-75 286.6 172 80.8
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.3e-75 286.6 172 78.5
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.2e-75 285.8 171 81.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.2e-75 285.8 172 80.2
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.9e-75 285.4 172 79.7
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.8e-75 285.0 173 79.2
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 3.8e-75 285.0 172 80.2
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 8.4e-75 283.9 172 80.8
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-74 283.5 172 80.8
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-74 282.7 179 78.2
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 3.2e-74 282.0 189 77.2
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.2e-74 282.0 186 75.3
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 4.2e-74 281.6 172 78.5
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 7.1e-74 280.8 172 77.9
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 7.1e-74 280.8 172 80.8
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.2e-73 280.0 200 72.5
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 7.8e-73 277.3 210 67.1
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.3e-72 276.6 191 70.7
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 5.6e-71 271.2 172 76.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 9.6e-71 270.4 173 77.5
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.3e-70 270.0 168 76.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.3e-70 270.0 173 76.9
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-70 269.6 172 76.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.6e-70 268.5 172 76.2
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 4.8e-70 268.1 172 75.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 6.2e-70 267.7 172 74.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.1e-69 266.9 172 75.0
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.1e-69 266.9 171 78.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 6.9e-69 264.2 166 77.1
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 6.9e-69 264.2 175 76.6
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 9.0e-69 263.8 172 75.0
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.2e-68 263.5 172 75.6
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.0e-68 262.7 172 73.8
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 5.8e-68 261.2 166 76.5
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.8e-68 261.2 166 76.5
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 6.4e-67 257.7 173 72.3
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.1e-66 256.9 173 74.0
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.5e-65 251.9 172 71.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.6e-65 251.5 146 84.9
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.0e-64 250.4 148 82.4
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.6e-62 243.0 141 85.8
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 6.2e-62 241.1 205 62.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-61 240.0 172 69.8
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 4.6e-57 224.9 149 73.2
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 7.9e-57 224.2 143 76.2
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-54 216.1 168 65.5
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.7e-54 215.3 206 57.3
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-53 213.4 139 75.5
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.4e-53 212.6 172 65.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.1e-50 203.8 171 62.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-46 189.5 151 64.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-45 186.4 171 59.1
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.3e-43 180.3 172 56.4
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.4e-42 176.8 172 51.7
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.4e-42 174.1 142 57.7
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.2e-38 162.9 163 44.2
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 5.3e-37 158.3 150 50.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 2.0e-36 156.4 153 47.1
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.9e-35 152.5 92 81.5
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.6e-23 112.8 78 69.2
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.6e-20 103.6 77 61.0
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.9e-19 99.4 59 81.4
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-17 92.0 117 42.7
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.5e-15 87.0 50 78.0
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 5.7e-15 85.1 114 43.0
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 3.7e-14 82.4 165 40.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 6.3e-14 81.6 164 37.2
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 8.3e-14 81.3 55 69.1
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.4e-13 79.7 49 73.5
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-13 79.3 56 69.6
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-13 79.3 56 69.6
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 4.5e-12 75.5 42 81.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 5.9e-12 75.1 59 55.9
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 3.8e-11 72.4 40 82.5
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.9e-10 70.1 61 59.0
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 4.7e-09 65.5 164 25.0
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-08 64.3 56 62.5
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 8.8e-08 61.2 166 28.9
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 2.0e-07 60.1 56 57.1
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 5.7e-07 58.5 56 55.4
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 9.8e-07 57.8 164 23.2
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.3e-06 57.4 137 24.1
EL10Ac1g01937 Beta vulgaris HOM05D005250 ORTHO05D006342 4.9e-06 55.5 59 50.8
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 8.3e-06 54.7 162 24.1


User provided reference genes

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