Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 2.2e-45 185.3 93 100.0
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.2e-35 152.9 89 84.3
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 6.0e-35 150.6 89 82.0
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 2.3e-34 148.7 89 79.8
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 5.0e-34 147.5 89 82.0
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 5.0e-34 147.5 89 79.8
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 6.6e-34 147.1 89 79.8
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 8.6e-34 146.7 89 82.0
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 1.5e-33 146.0 89 79.8
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 1.5e-33 146.0 89 80.9
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 1.9e-33 145.6 89 77.5
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 2.5e-33 145.2 89 78.7
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 3.3e-33 144.8 89 79.8
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 3.3e-33 144.8 89 79.8
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 4.3e-33 144.4 89 78.7
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 4.3e-33 144.4 83 80.7
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 5.6e-33 144.1 89 79.8
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 7.3e-33 143.7 89 78.7
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 7.3e-33 143.7 89 78.7
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 9.5e-33 143.3 89 77.5
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 9.5e-33 143.3 83 84.3
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 9.5e-33 143.3 83 80.7
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 1.2e-32 142.9 89 78.7
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 1.2e-32 142.9 89 78.7
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 1.2e-32 142.9 89 77.5
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.2e-32 142.9 89 78.7
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.2e-32 142.9 89 78.7
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.2e-32 142.9 89 78.7
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.6e-32 142.5 89 76.4
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 2.1e-32 142.1 89 76.4
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 2.1e-32 142.1 89 78.7
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 2.1e-32 142.1 89 76.4
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 2.1e-32 142.1 89 78.7
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 2.1e-32 142.1 88 78.4
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 2.1e-32 142.1 83 80.7
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 2.8e-32 141.7 89 77.5
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 2.8e-32 141.7 89 77.5
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.8e-32 141.7 89 79.8
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.8e-32 141.7 89 79.8
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.8e-32 141.7 89 79.8
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 3.6e-32 141.4 89 78.7
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 4.7e-32 141.0 89 77.5
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 4.7e-32 141.0 89 77.5
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 4.7e-32 141.0 89 75.3
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 4.7e-32 141.0 89 77.5
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 4.7e-32 141.0 83 79.5
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 6.2e-32 140.6 89 76.4
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 8.1e-32 140.2 89 77.5
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 8.1e-32 140.2 89 76.4
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 76.4
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 77.5
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 76.4
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 76.4
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 76.4
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 76.4
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 1.1e-31 139.8 89 76.4
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 1.1e-31 139.8 80 88.8
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.1e-31 139.8 80 88.8
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.1e-31 139.8 88 79.5
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 1.1e-31 139.8 83 79.5
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.4e-31 139.4 89 75.3
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.4e-31 139.4 88 76.1
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.4e-31 139.4 83 80.7
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 1.4e-31 139.4 89 77.5
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 1.4e-31 139.4 89 77.5
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.4e-31 139.4 89 75.3
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 1.8e-31 139.0 89 78.7
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.8e-31 139.0 89 78.7
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 1.8e-31 139.0 88 77.3
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.3e-31 138.7 89 75.3
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 2.3e-31 138.7 89 75.3
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 2.3e-31 138.7 89 75.3
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.3e-31 138.7 89 75.3
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 2.3e-31 138.7 89 76.4
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 3.1e-31 138.3 89 74.2
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.1e-31 138.3 89 75.3
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 3.1e-31 138.3 89 76.4
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.1e-31 138.3 89 75.3
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 3.1e-31 138.3 89 76.4
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.0e-31 137.9 89 75.3
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 4.0e-31 137.9 89 73.0
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.0e-31 137.9 89 77.5
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 4.0e-31 137.9 89 75.3
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 5.2e-31 137.5 89 74.2
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 5.2e-31 137.5 89 73.0
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 5.2e-31 137.5 89 75.3
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 6.8e-31 137.1 89 76.4
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 8.9e-31 136.7 89 75.3
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.9e-31 136.7 89 74.2
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 8.9e-31 136.7 89 74.2
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 8.9e-31 136.7 89 73.0
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 8.9e-31 136.7 89 74.2
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 8.9e-31 136.7 89 74.2
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 75.3
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 75.3
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 74.2
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 75.3
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 75.3
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 75.3
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.2e-30 136.3 89 74.2
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.5e-30 136.0 83 77.1
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.5e-30 136.0 89 74.2
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.5e-30 136.0 89 75.3
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 1.5e-30 136.0 89 75.3
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 2.0e-30 135.6 89 74.2
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 2.0e-30 135.6 89 75.3
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.6e-30 135.2 89 75.3
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 2.6e-30 135.2 89 75.3
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 3.4e-30 134.8 89 73.0
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 3.4e-30 134.8 89 70.8
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 3.4e-30 134.8 89 74.2
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.4e-30 134.8 87 77.0
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 4.4e-30 134.4 89 73.0
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 4.4e-30 134.4 89 71.9
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 4.4e-30 134.4 89 74.2
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 4.4e-30 134.4 89 74.2
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 5.8e-30 134.0 89 73.0
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 7.5e-30 133.7 89 74.2
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 7.5e-30 133.7 83 77.1
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 9.8e-30 133.3 89 74.2
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 9.8e-30 133.3 83 78.3
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 9.8e-30 133.3 89 73.0
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-29 132.9 75 86.7
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 1.3e-29 132.9 89 73.0
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 1.7e-29 132.5 89 73.0
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.7e-29 132.5 83 77.1
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.7e-29 132.5 87 73.6
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 2.9e-29 131.7 89 71.9
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 2.9e-29 131.7 89 71.9
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 6.4e-29 130.6 89 75.3
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 1.1e-28 129.8 89 71.9
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 3.2e-28 128.3 89 70.8
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 3.2e-28 128.3 89 70.8
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 5.4e-28 127.5 89 71.9
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.6e-27 125.9 83 71.1
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 4.6e-27 124.4 83 71.1
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 7.8e-27 123.6 89 69.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.0e-26 123.2 83 71.1
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 1.7e-26 122.5 83 68.7
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.5e-25 119.4 81 67.9
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 3.3e-25 118.2 84 70.2
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 5.6e-25 117.5 83 68.7
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 1.6e-24 115.9 84 67.9
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 2.8e-24 115.2 83 63.9
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 2.8e-24 115.2 83 63.9
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 8.1e-24 113.6 73 74.0
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.3e-23 112.1 76 69.7
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 8.9e-23 110.2 83 63.9
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 3.4e-22 108.2 89 65.2
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 9.9e-22 106.7 83 61.4
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 7.3e-17 90.5 90 53.3
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 6.8e-15 84.0 82 53.7
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.4e-14 81.6 67 56.7
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 8.4e-13 77.0 42 88.1
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 6.0e-11 70.9 62 59.7
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.9e-09 65.9 49 65.3
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 1.9e-09 65.9 88 42.0
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 2.8e-08 62.0 32 93.8
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 4.8e-08 61.2 52 57.7
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 1.1e-07 60.1 95 34.7
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.2e-06 56.6 39 79.5
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.6e-06 55.5 36 69.4
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.8e-06 54.3 36 69.4


User provided reference genes

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