Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-139 498.8 253 100.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-126 455.7 230 100.0
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.0e-109 399.4 229 88.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 9.0e-102 374.0 231 82.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.9e-96 356.3 230 78.3
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 9.7e-96 354.0 268 72.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 9.7e-96 354.0 268 72.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 9.7e-96 354.0 243 75.7
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.5e-91 338.2 245 69.4
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 3.0e-89 332.4 237 70.5
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 6.7e-89 331.3 233 73.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 6.7e-89 331.3 241 69.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.1e-88 330.5 243 68.3
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.5e-88 329.3 237 73.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 4.8e-87 325.1 266 67.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.4e-86 323.6 236 72.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.9e-86 321.2 235 72.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.2e-85 320.5 239 70.7
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 3.4e-85 318.9 238 72.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.5e-83 311.6 240 67.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.1e-82 309.7 239 69.5
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.0e-81 307.4 249 66.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 8.8e-81 304.3 237 69.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 4.8e-79 298.5 239 66.1
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.2e-77 293.9 238 66.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.0e-77 293.1 242 64.9
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.6e-77 292.7 234 66.7
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.7e-76 290.0 238 66.4
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.7e-74 282.7 237 67.5
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 6.1e-74 281.6 234 65.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.0e-73 279.3 236 64.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.8e-73 277.7 236 64.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.3e-72 275.8 233 63.9
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.4e-72 275.4 224 65.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.7e-71 272.3 236 62.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.2e-69 267.3 220 64.1
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.6e-69 266.9 203 69.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 7.7e-69 264.6 250 60.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-68 262.7 238 60.9
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 6.5e-68 261.5 219 65.3
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.1e-67 260.8 241 59.8
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.5e-67 260.4 241 61.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.2e-67 259.2 234 62.4
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.2e-67 259.2 232 61.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.2e-67 258.8 245 60.4
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.5e-67 258.5 223 65.9
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 7.2e-67 258.1 219 63.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.7e-66 255.4 240 57.9
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.0e-65 254.2 232 63.4
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-65 253.8 230 61.3
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.8e-65 253.4 241 57.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 8.8e-65 251.1 222 63.1
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.2e-64 250.8 176 76.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.6e-64 249.6 230 58.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.6e-64 249.6 233 60.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 4.4e-64 248.8 242 59.9
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 4.4e-64 248.8 238 57.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 5.7e-64 248.4 242 59.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 7.5e-64 248.1 228 59.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 9.7e-64 247.7 233 59.7
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.8e-63 246.1 221 59.7
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.7e-63 245.7 230 59.6
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.8e-63 245.4 222 62.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 4.8e-63 245.4 161 75.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.3e-63 245.0 233 57.5
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 8.2e-63 244.6 203 63.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.1e-62 244.2 215 63.3
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.4e-62 243.8 238 58.4
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.4e-62 243.8 227 60.4
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.8e-62 243.4 227 59.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 4.1e-62 242.3 226 59.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.3e-62 241.9 229 60.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 7.0e-62 241.5 289 51.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 9.1e-62 241.1 254 57.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 9.1e-62 241.1 238 58.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.6e-61 240.4 234 56.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.0e-61 240.0 247 57.5
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-61 240.0 227 59.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.0e-61 240.0 229 59.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.7e-61 239.6 217 62.2
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.5e-61 239.2 211 63.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 5.9e-61 238.4 227 58.6
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.9e-61 238.4 227 58.6
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.0e-60 237.7 229 59.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.0e-60 237.7 218 61.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.0e-60 237.7 232 59.9
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.3e-60 237.3 234 56.4
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-60 237.3 221 64.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.9e-60 236.1 230 56.1
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.8e-60 235.7 236 58.5
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.5e-60 235.0 162 75.3
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.5e-60 235.0 227 58.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 6.5e-60 235.0 217 61.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 8.5e-60 234.6 238 58.0
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.9e-59 233.4 238 58.0
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.2e-59 232.6 229 57.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.2e-59 232.6 229 57.2
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.2e-59 232.3 184 68.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 5.5e-59 231.9 229 58.1
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.1e-58 229.9 239 57.3
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.7e-58 229.6 239 56.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 8.0e-58 228.0 230 55.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.3e-57 226.5 209 61.2
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.2e-57 225.3 218 60.6
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 5.2e-57 225.3 230 57.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.8e-57 224.9 205 61.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 6.8e-57 224.9 236 55.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 8.8e-57 224.6 240 55.8
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.6e-56 223.0 241 55.6
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.5e-56 221.5 232 56.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 9.8e-56 221.1 232 55.6
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-55 220.3 241 55.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.7e-55 220.3 227 58.1
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.7e-55 220.3 240 55.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.2e-55 219.9 235 53.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.2e-55 219.9 240 55.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.8e-55 219.5 206 60.2
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-55 219.2 255 51.8
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.7e-55 219.2 229 55.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.7e-55 219.2 215 56.7
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 6.3e-55 218.4 198 65.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.1e-54 217.6 244 53.7
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.1e-54 216.1 240 52.5
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.1e-54 216.1 231 56.7
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.2e-53 214.2 208 58.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.2e-53 214.2 255 51.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.5e-53 212.6 160 69.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.9e-52 209.5 238 55.5
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.9e-51 206.8 173 64.2
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 6.1e-50 201.8 130 75.4
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 6.3e-47 191.8 249 48.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.1e-46 191.0 228 50.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-46 190.7 224 52.7
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 7.8e-45 184.9 180 57.2
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.9e-44 183.0 225 50.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.5e-43 177.9 191 55.5
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.8e-42 176.4 131 66.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.8e-42 176.4 167 58.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.8e-40 167.9 143 60.1
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.7e-39 166.0 224 46.4
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.1e-38 162.5 138 60.1
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.3e-36 157.5 132 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.6e-36 155.2 119 63.9
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.8e-34 149.8 172 51.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 4.7e-34 149.1 168 52.4
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.4e-33 147.5 181 50.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.2e-33 145.6 230 43.5
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.2e-33 145.6 146 55.5
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.2e-33 145.6 129 61.2
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-31 139.4 126 57.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.2e-24 117.9 75 78.7
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.4e-24 116.3 170 43.5
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.4e-24 116.3 193 39.4
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.2e-14 83.2 86 58.1
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.3e-12 77.0 104 49.0
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 4.3e-11 72.8 53 64.2
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 6.9e-09 65.5 88 45.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.9e-08 61.6 46 65.2


User provided reference genes

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