Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 5.2e-266 920.6 512 100.0
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 1.8e-210 736.1 513 83.4
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 7.5e-188 661.0 523 71.1
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 9.8e-188 660.6 512 72.1
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 2.0e-185 652.9 512 71.5
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 6.5e-184 647.9 512 70.9
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 5.6e-175 618.2 512 67.8
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.4e-170 602.8 510 65.3
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.9e-169 598.2 513 66.5
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.1e-167 594.0 512 64.6
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 2.3e-165 586.3 512 65.4
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 8.9e-165 584.3 513 64.1
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 1.5e-164 583.6 513 64.3
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.9e-163 578.6 513 64.1
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 8.3e-163 577.8 510 64.7
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 2.4e-162 576.2 513 65.3
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 2.7e-161 572.8 519 63.4
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 2.7e-161 572.8 512 64.1
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 2.7e-161 572.8 512 64.3
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 2.7e-161 572.8 510 66.9
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.6e-161 572.0 513 63.0
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 2.3e-157 559.7 515 62.1
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 5.8e-156 555.1 513 63.9
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 2.4e-154 549.7 512 62.7
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 9.2e-154 547.7 565 57.2
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 1.2e-153 547.4 512 62.7
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 1.3e-152 543.9 586 57.0
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 1.3e-152 543.9 512 62.1
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.7e-152 543.5 510 61.2
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 3.0e-152 542.7 541 60.4
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 3.9e-152 542.3 511 60.7
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 8.6e-152 541.2 511 60.7
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 8.6e-152 541.2 522 60.3
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 9.5e-151 537.7 512 60.9
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 2.1e-150 536.6 512 61.1
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 1.1e-149 534.3 511 61.4
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 1.8e-149 533.5 514 60.7
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 1.8e-149 533.5 516 59.1
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 2.3e-149 533.1 511 60.9
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 4.0e-149 532.3 513 60.4
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 6.8e-149 531.6 522 59.6
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 3.4e-148 529.3 515 61.0
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 2.9e-147 526.2 539 59.9
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 6.4e-147 525.0 564 56.2
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.2e-145 520.8 512 58.8
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.6e-145 520.4 512 60.4
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 6.6e-144 515.0 512 60.0
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 8.6e-144 514.6 513 59.3
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 1.5e-143 513.8 511 59.1
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 1.6e-142 510.4 513 58.3
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 8.1e-142 508.1 515 59.4
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 8.1e-142 508.1 515 59.4
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 1.8e-141 506.9 553 55.7
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 4.0e-141 505.8 512 59.0
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 6.9e-141 505.0 511 61.1
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 6.9e-141 505.0 513 58.3
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 2.6e-140 503.1 526 58.4
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.4e-138 496.5 513 57.1
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 1.6e-137 493.8 525 57.0
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.1e-137 493.4 551 54.6
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 2.7e-137 493.0 513 56.7
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 4.6e-137 492.3 525 54.9
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 1.7e-136 490.3 511 57.3
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.3e-136 490.0 511 57.1
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 6.6e-136 488.4 538 55.4
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 5.6e-135 485.3 512 56.6
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.3e-134 484.2 510 56.1
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 3.6e-134 482.6 513 60.0
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 3.1e-133 479.6 513 56.7
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 6.9e-133 478.4 515 57.3
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 5.8e-132 475.3 511 56.6
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 6.4e-131 471.9 512 56.6
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.2e-130 469.5 586 50.5
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 3.5e-129 466.1 511 54.4
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 3.5e-129 466.1 511 54.6
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 3.9e-128 462.6 511 55.4
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 1.9e-127 460.3 516 55.0
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 5.6e-127 458.8 511 54.4
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 2.1e-126 456.8 529 55.4
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 2.8e-126 456.4 514 58.8
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 8.1e-126 454.9 511 53.4
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.2e-123 446.8 835 39.9
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 6.4e-123 445.3 532 51.7
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 8.4e-123 444.9 514 52.7
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.9e-122 443.7 525 54.5
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.8e-120 437.2 519 54.3
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 8.7e-120 434.9 512 52.7
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 9.6e-119 431.4 514 51.6
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 8.1e-118 428.3 521 50.5
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 2.4e-117 426.8 515 53.6
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 3.1e-117 426.4 511 51.5
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 3.1e-117 426.4 514 51.2
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 1.0e-115 421.4 514 51.2
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 6.5e-115 418.7 511 50.7
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 5.5e-114 415.6 512 51.2
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 7.1e-114 415.2 510 50.2
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 1.2e-113 414.5 514 50.4
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 4.6e-113 412.5 514 50.8
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 3.3e-111 406.4 514 50.4
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 3.7e-110 402.9 513 49.5
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.8e-110 402.5 548 48.4
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 6.9e-109 398.7 490 50.8
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.6e-108 396.7 510 50.0
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 2.9e-107 393.3 511 48.1
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 4.2e-106 389.4 516 49.2
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 3.7e-102 376.3 585 46.2
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 6.1e-97 359.0 506 47.4
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 7.4e-95 352.1 530 45.7
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.3e-80 303.9 335 55.2
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 7.5e-71 272.3 408 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 2.5e-66 257.3 509 37.5
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 3.2e-66 256.9 405 45.7
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.2e-60 238.4 509 35.2
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.2e-60 238.4 509 35.2
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.7e-59 234.6 523 36.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.6e-57 228.0 351 45.0
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 9.8e-55 218.8 507 34.3
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 5.4e-53 213.0 312 44.6
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.0e-48 196.8 170 62.4
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.9e-46 189.9 392 37.0
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.3e-43 181.8 137 70.8
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 2.3e-43 181.0 501 32.5
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 5.1e-35 153.3 225 44.4
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.3e-30 138.7 159 52.2
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 3.5e-28 130.6 75 86.7
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 6.0e-28 129.8 301 36.2
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 5.2e-24 116.7 123 56.9
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 2.0e-23 114.8 61 90.2
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 3.2e-21 107.5 669 25.1
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 7.1e-21 106.3 137 51.1
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 1.7e-19 101.7 52 94.2
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 9.6e-18 95.9 146 44.5
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 3.6e-17 94.0 279 32.6
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.0e-15 88.2 180 37.8
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.4e-13 80.1 120 45.8
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 2.1e-09 68.2 116 40.5
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.4e-08 64.7 34 85.3
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 3.1e-08 64.3 36 80.6
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 5.3e-08 63.5 34 85.3
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.5e-07 62.0 77 46.8
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 1.3e-06 58.9 57 57.9
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 2.9e-06 57.8 50 62.0
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 2.9e-06 57.8 50 62.0


User provided reference genes

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