Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1254.6 637 100.0
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1088.6 651 85.6
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1087.8 651 85.4
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1080.9 644 84.2
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 0.0e+00 1079.7 665 83.6
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 2.6e-307 1058.1 642 83.3
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 4.5e-307 1057.4 658 81.8
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 6.7e-303 1043.5 688 79.1
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 2.4e-300 1035.0 659 78.8
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 9.0e-300 1033.1 634 82.2
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 2.6e-299 1031.6 662 79.5
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 5.8e-299 1030.4 640 81.1
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 8.4e-298 1026.5 656 79.9
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.4e-297 1025.8 656 78.7
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 9.3e-297 1023.1 648 80.7
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 2.1e-296 1021.9 666 78.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.9e-295 1017.7 652 79.8
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 3.9e-295 1017.7 641 81.0
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 1.1e-294 1016.1 665 78.6
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 1.1e-294 1016.1 674 77.6
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 1.9e-294 1015.4 662 78.5
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 7.4e-294 1013.4 654 79.7
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 8.2e-293 1010.0 661 77.0
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 1.8e-292 1008.8 656 77.3
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.3e-292 1007.3 663 78.6
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 4.5e-291 1004.2 663 78.6
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 5.8e-291 1003.8 677 76.2
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 7.6e-291 1003.4 659 76.2
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 7.6e-291 1003.4 639 78.6
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 8.4e-290 1000.0 681 76.2
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.2e-289 998.0 663 78.0
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 3.2e-289 998.0 657 76.7
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 7.1e-289 996.9 665 78.5
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.1e-288 995.3 652 78.5
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 3.5e-288 994.6 657 78.4
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 6.0e-288 993.8 688 74.6
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 7.9e-288 993.4 663 76.3
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 3.9e-287 991.1 647 77.4
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.1e-286 989.6 681 75.9
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 2.5e-286 988.4 661 75.9
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 1.3e-285 986.1 659 76.0
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 1.3e-285 986.1 663 75.7
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.0e-282 976.5 640 76.9
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.0e-282 976.5 635 77.2
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 6.5e-282 973.8 691 74.0
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 3.2e-281 971.5 657 74.7
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.2e-280 969.5 669 74.1
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 4.6e-280 967.6 655 75.0
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.0e-279 966.5 661 75.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.8e-279 965.7 675 72.6
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.3e-279 965.3 669 74.1
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 3.9e-279 964.5 646 74.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 3.9e-279 964.5 653 75.5
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 5.1e-279 964.1 666 74.2
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.1e-278 963.0 669 73.8
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.1e-278 963.0 655 74.5
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 1.5e-278 962.6 655 74.4
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 4.3e-278 961.1 666 73.9
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 4.3e-278 961.1 640 76.1
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 7.4e-278 960.3 666 73.0
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 7.4e-278 960.3 667 73.5
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.3e-277 959.5 640 75.3
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 1.3e-277 959.5 640 75.3
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 1.3e-277 959.5 661 73.8
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-277 959.1 667 73.5
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 3.7e-277 958.0 667 73.5
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 6.3e-277 957.2 642 78.0
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 2.4e-276 955.3 666 73.1
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 3.1e-276 954.9 667 73.0
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 3.1e-276 954.9 667 73.0
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 1.2e-275 953.0 666 73.4
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 2.0e-275 952.2 665 73.4
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 3.8e-274 948.0 659 73.0
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 6.7e-271 937.2 604 79.3
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 1.1e-270 936.4 669 71.2
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 3.3e-270 934.9 682 69.5
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 2.8e-269 931.8 643 74.8
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.6e-267 925.2 659 72.4
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.5e-265 918.7 644 75.9
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.5e-262 909.4 639 73.1
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 5.7e-262 907.5 662 71.3
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 3.5e-259 898.3 476 94.5
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 4.5e-259 897.9 674 69.6
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 9.4e-257 890.2 587 78.0
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 1.0e-255 886.7 661 67.3
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 2.6e-254 882.1 659 70.0
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.1e-252 876.7 636 70.4
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 3.1e-252 875.2 655 69.5
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 9.1e-252 873.6 676 67.6
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.3e-250 869.8 666 68.3
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 1.3e-250 869.8 493 87.6
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 3.0e-247 858.6 663 68.3
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 5.2e-247 857.8 656 68.9
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 1.2e-238 830.1 493 83.6
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 9.8e-238 827.0 654 64.5
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.3e-237 826.6 549 76.3
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 2.8e-237 825.5 806 57.9
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 1.7e-234 816.2 556 75.2
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 1.7e-234 816.2 673 66.1
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 4.4e-230 801.6 664 64.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.3e-229 800.0 664 64.2
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.1e-228 797.0 493 79.7
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.2e-224 783.5 515 77.5
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 8.0e-224 780.8 532 74.2
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 3.0e-218 762.3 493 76.1
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.2e-216 756.9 493 76.5
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.8e-215 753.1 493 75.7
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 4.4e-214 748.4 452 81.9
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 3.7e-213 745.3 454 80.6
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 1.1e-212 743.8 493 74.8
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 3.2e-212 742.3 500 74.0
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 1.1e-209 733.8 478 76.4
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 9.5e-209 730.7 493 73.2
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.4e-199 700.3 659 55.7
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.1e-188 664.1 660 57.6
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.6e-187 658.7 655 52.8
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 2.1e-171 606.7 392 75.8
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 2.1e-171 606.7 588 53.1
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 9.7e-169 597.8 398 75.1
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 5.5e-164 582.0 548 54.4
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 8.2e-160 568.2 568 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.1e-151 541.2 486 56.8
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.6e-150 536.6 646 46.3
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.5e-148 530.8 307 83.7
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 9.4e-148 528.1 442 60.9
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 1.0e-146 524.6 430 65.8
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 5.0e-141 505.8 344 74.4
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 5.5e-140 502.3 685 41.6
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 3.6e-131 473.0 380 61.6
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.7e-128 463.0 322 78.6
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 6.0e-110 402.5 338 62.4
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 4.7e-107 392.9 394 57.9
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.2e-97 361.7 427 49.9
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 7.1e-95 352.4 424 49.1
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.1e-92 345.1 221 74.7
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.5e-76 291.6 470 42.3
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.5e-76 291.6 470 42.3
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 1.3e-67 261.9 381 41.2
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.3e-60 236.9 196 63.8
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 1.3e-59 235.3 162 72.2
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 2.1e-59 234.6 150 82.7
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.8e-59 234.2 162 72.8
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 2.4e-58 231.1 155 77.4
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.7e-56 224.9 144 80.6
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 1.6e-54 218.4 143 77.6
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 6.1e-54 216.5 147 79.6
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 1.3e-51 208.8 172 65.7
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 2.2e-51 208.0 145 77.2
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 7.7e-49 199.5 148 66.9
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 6.1e-46 189.9 202 53.5
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 6.7e-45 186.4 98 95.9
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.1e-44 185.7 98 95.9
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 2.0e-44 184.9 151 62.3
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 9.1e-42 176.0 129 70.5
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 5.3e-34 150.2 111 67.6
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 7.0e-34 149.8 146 54.8
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 7.7e-33 146.4 80 90.0
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 2.3e-29 134.8 234 39.7
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 2.3e-29 134.8 130 56.2
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.5e-28 132.1 98 74.5
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 3.7e-27 127.5 98 67.3
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.8e-26 125.2 83 71.1
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 9.1e-26 122.9 93 72.0
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 6.5e-24 116.7 104 51.9
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-22 112.5 96 62.5
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 3.0e-21 107.8 102 53.9
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 1.7e-16 92.0 96 54.2
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.7e-14 84.7 69 56.5
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.6e-14 84.3 51 76.5
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 6.3e-11 73.6 129 34.1
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 1.7e-08 65.5 95 40.0


User provided reference genes

Program Settings