Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 3.8e-114 414.8 209 100.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 7.7e-99 364.0 207 86.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.8e-92 342.8 207 81.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.2e-90 335.9 208 80.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.4e-87 326.6 207 75.8
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.2e-86 323.6 207 76.8
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.3e-85 320.1 207 73.4
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.1e-84 317.0 205 74.1
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.1e-84 317.0 206 74.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.8e-84 316.2 206 74.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 9.1e-84 313.9 206 74.8
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.6e-83 313.2 207 74.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.7e-83 312.4 208 72.1
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.7e-83 312.4 202 74.3
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 7.7e-83 310.8 207 72.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.3e-81 305.4 207 73.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.1e-80 302.8 206 75.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.8e-80 302.4 207 70.5
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 3.6e-80 302.0 206 70.4
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 6.1e-80 301.2 208 71.2
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 8.0e-80 300.8 206 70.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.8e-79 299.7 207 70.5
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 4.0e-79 298.5 207 71.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 6.8e-79 297.7 198 76.3
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-78 297.0 207 70.5
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.4e-78 295.0 220 68.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.5e-78 294.3 207 69.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.8e-77 292.4 207 69.1
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 2.8e-77 292.4 207 69.6
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 6.3e-77 291.2 203 68.5
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 8.3e-77 290.8 201 69.7
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.1e-76 290.4 206 68.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-76 290.4 198 72.2
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.1e-76 290.4 198 75.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.4e-76 290.0 204 69.1
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.8e-76 289.7 202 73.3
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.1e-76 288.9 206 70.9
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.1e-76 288.5 202 70.3
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.2e-75 287.0 207 67.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.7e-75 285.8 205 63.9
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.5e-75 285.4 198 68.7
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.5e-75 285.0 206 68.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 7.8e-75 284.3 178 76.4
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.7e-74 283.1 176 77.8
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.7e-74 283.1 201 69.7
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.3e-74 282.7 205 68.8
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.9e-74 282.3 207 71.0
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.9e-74 282.3 208 67.8
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.9e-74 282.3 208 67.8
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.0e-74 281.6 208 67.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.6e-74 281.2 201 70.6
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 8.6e-74 280.8 239 60.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-73 280.0 207 67.1
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.9e-73 279.6 206 68.4
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.9e-73 279.6 207 66.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 3.3e-73 278.9 202 64.9
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 9.5e-73 277.3 202 65.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.2e-72 276.9 191 71.7
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-72 276.9 207 66.2
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 2.8e-72 275.8 206 67.5
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 4.7e-72 275.0 188 70.7
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 6.1e-72 274.6 213 64.3
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.0e-71 273.9 206 65.5
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.4e-71 273.5 181 71.3
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.4e-71 273.5 186 71.5
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.8e-71 273.1 202 64.4
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.3e-71 272.7 181 72.4
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.3e-71 272.7 207 65.7
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.1e-71 272.3 212 64.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.1e-71 272.3 212 64.6
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 4.0e-71 271.9 202 66.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 6.8e-71 271.2 202 63.4
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-70 270.4 210 64.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.6e-70 269.2 206 64.1
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.6e-70 269.2 206 64.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.6e-70 269.2 207 65.2
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.6e-70 269.2 200 66.0
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.4e-70 268.9 205 67.8
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.4e-70 268.5 213 64.8
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.8e-70 268.1 180 72.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 9.8e-70 267.3 180 72.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 9.8e-70 267.3 180 72.8
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.3e-69 266.9 180 72.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.3e-69 266.9 192 67.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 8.3e-69 264.2 185 70.3
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.1e-68 263.8 177 72.9
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.4e-68 262.7 182 69.8
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 4.1e-68 261.9 182 69.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.1e-68 261.9 195 66.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-67 260.0 234 59.0
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.6e-67 260.0 194 66.5
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.5e-67 258.8 206 64.6
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 6.0e-67 258.1 180 68.3
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 6.0e-67 258.1 232 60.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.0e-66 257.3 185 67.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.0e-66 257.3 182 69.2
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.7e-66 256.5 179 67.0
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.3e-65 252.3 200 61.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.8e-64 249.2 195 63.6
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.6e-64 248.8 148 75.7
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.6e-64 248.8 178 65.7
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 8.0e-64 247.7 207 59.9
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-63 246.9 201 60.7
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.1e-63 245.7 145 80.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.5e-62 243.4 182 65.4
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.8e-62 241.5 151 74.2
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 7.5e-62 241.1 146 79.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.7e-61 240.0 136 83.1
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.7e-61 240.0 182 63.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.2e-61 239.6 147 76.9
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-61 239.6 164 71.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.9e-61 239.2 179 68.2
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-61 239.2 182 63.7
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.7e-61 238.8 147 76.2
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 6.4e-61 238.0 205 60.5
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.1e-60 237.3 143 75.5
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.4e-60 236.9 195 62.6
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.0e-60 234.6 156 73.1
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.6e-59 231.9 141 75.9
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 7.8e-59 231.1 214 57.0
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.3e-57 225.7 166 68.1
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.3e-57 225.7 152 68.4
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.5e-54 216.9 191 56.0
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.0e-54 216.5 120 83.3
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.2e-53 213.0 165 66.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.4e-52 208.4 184 56.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.3e-50 203.0 215 53.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.3e-50 203.0 162 64.8
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 3.0e-50 202.6 168 63.1
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.5e-49 200.3 162 59.9
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 3.1e-47 192.6 208 51.9
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 6.8e-47 191.4 143 67.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.2e-46 190.7 143 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 7.6e-46 188.0 193 49.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.2e-45 186.4 142 61.3
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 9.2e-44 181.0 139 56.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.7e-43 179.5 203 48.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.3e-42 177.2 139 63.3
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 5.3e-39 165.2 181 49.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.7e-37 160.2 146 59.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 9.3e-36 154.5 145 58.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.4e-31 139.8 141 54.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.2e-30 137.5 122 58.2
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-28 130.6 153 50.3
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 9.0e-23 111.3 79 60.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.7e-19 99.8 141 38.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 6.7e-18 95.1 208 32.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.6e-17 91.3 81 55.6
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.3e-15 85.5 134 36.6
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 6.9e-15 85.1 131 35.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.9e-12 77.0 152 30.3
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-11 72.8 82 51.2
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 7.9e-11 71.6 83 48.2
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.9e-10 69.3 114 31.6
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 5.1e-10 68.9 160 29.4
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 5.1e-10 68.9 120 30.8
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 2.5e-09 66.6 68 50.0


User provided reference genes

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