Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33944 Davidia involucrata HOM05D002177 ORTHO05D002257 7.2e-30 133.3 68 100.0
Lj1A847T19 Lonicera japonica HOM05D002177 ORTHO05D002257 2.7e-13 78.2 46 84.8
Dinv08313 Davidia involucrata HOM05D002177 ORTHO05D002257 1.8e-12 75.5 46 84.8
Haze_09471 Corylus avellana HOM05D002177 ORTHO05D002257 2.6e-11 71.6 46 73.9
GSVIVG01014382001 Vitis vinifera HOM05D002177 ORTHO05D002257 2.6e-11 71.6 46 76.1
CSS0045170 Camellia sinensis var. sinensis HOM05D002177 ORTHO05D002257 5.7e-11 70.5 46 76.1
Rhsim06G0196600 Rhododendron simsii HOM05D002177 ORTHO05D002257 5.7e-11 70.5 46 76.1
Manes.03G113100 Manihot esculenta HOM05D002177 ORTHO05D002257 7.5e-11 70.1 46 73.9
Potri.011G122000 Populus trichocarpa HOM05D002177 ORTHO05D002257 1.3e-10 69.3 46 69.6
Cfa020550 Carpinus fangiana HOM05D002177 ORTHO05D002257 1.7e-10 68.9 46 71.7
CiPaw.11G173000 Carya illinoinensis HOM05D002177 ORTHO05D002257 1.7e-10 68.9 46 69.6
Dinv04321 Davidia involucrata HOM05D002177 ORTHO05D002257 1.7e-10 68.9 46 73.9
Migut.M00855 Erythranthe guttata HOM05D002177 ORTHO05D002257 2.2e-10 68.6 46 76.1
Lj3g0000287 Lotus japonicus HOM05D002177 ORTHO05D002257 2.2e-10 68.6 46 69.6
CANSAT56G2495 Cannabis sativa HOM05D002177 ORTHO05D002257 2.8e-10 68.2 46 69.6
Potri.001G402900 Populus trichocarpa HOM05D002177 ORTHO05D002257 2.8e-10 68.2 46 69.6
Sabra16G0264500 Salix brachista HOM05D002177 ORTHO05D002257 2.8e-10 68.2 46 69.6
Duzib213G0974 Durio zibethinus HOM05D002177 ORTHO05D002257 3.7e-10 67.8 46 71.7
Lalb_Chr01g0016941 Lupinus albus HOM05D002177 ORTHO05D002257 3.7e-10 67.8 46 71.7
Gohir.A01G065400 Gossypium hirsutum HOM05D002177 ORTHO05D002257 4.8e-10 67.4 46 71.7
Actinidia09990 Actinidia chinensis HOM05D002177 ORTHO05D002257 6.3e-10 67.0 46 69.6
CiPaw.15G172200 Carya illinoinensis HOM05D002177 ORTHO05D002257 6.3e-10 67.0 46 67.4
COL.COLO4_09430 Corchorus olitorius HOM05D002177 ORTHO05D002257 6.3e-10 67.0 46 71.7
CsaV3_4G033840 Cucumis sativus L. HOM05D002177 ORTHO05D002257 6.3e-10 67.0 46 65.2
Lsat_1_v5_gn_7_105080 Lactuca sativa HOM05D002177 ORTHO05D002257 6.3e-10 67.0 47 72.3
Lj8A158T79 Lonicera japonica HOM05D002177 ORTHO05D002257 6.3e-10 67.0 45 71.1
QL08p019840 Quercus lobata HOM05D002177 ORTHO05D002257 6.3e-10 67.0 46 67.4
Gohir.D05G358760 Gossypium hirsutum HOM05D002177 ORTHO05D002257 8.3e-10 66.6 46 69.6
Gohir.D05G358780 Gossypium hirsutum HOM05D002177 ORTHO05D002257 8.3e-10 66.6 46 69.6
Gorai.009G434500 Gossypium raimondii HOM05D002177 ORTHO05D002257 8.3e-10 66.6 46 69.6
Oeu019343.1 Olea europaea HOM05D002177 ORTHO05D002257 8.3e-10 66.6 45 75.6
TWI38G1374 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 8.3e-10 66.6 46 69.6
Migut.H01925 Erythranthe guttata HOM05D002177 ORTHO05D002257 1.1e-09 66.2 46 71.7
Prupe.4G185300 Prunus persica HOM05D002177 ORTHO05D002257 1.1e-09 66.2 46 67.4
PGR004G1366 Punica granatum HOM05D002177 ORTHO05D002257 1.1e-09 66.2 46 69.6
MELO3C016711.2 Cucumis melo HOM05D002177 ORTHO05D002257 1.4e-09 65.9 46 63.0
Duzib170G1083 Durio zibethinus HOM05D002177 ORTHO05D002257 1.4e-09 65.9 46 71.7
Gohir.D01G052800 Gossypium hirsutum HOM05D002177 ORTHO05D002257 1.4e-09 65.9 46 69.6
Gorai.002G072600 Gossypium raimondii HOM05D002177 ORTHO05D002257 1.4e-09 65.9 46 69.6
Rhsim04G0019700 Rhododendron simsii HOM05D002177 ORTHO05D002257 1.4e-09 65.9 46 71.7
ClCG11G018190 Citrullus lanatus HOM05D002177 ORTHO05D002257 1.8e-09 65.5 46 60.9
TAR629G1520 Trochodendron aralioides HOM05D002177 ORTHO05D002257 1.8e-09 65.5 46 69.6
Gohir.A04G028404 Gossypium hirsutum HOM05D002177 ORTHO05D002257 2.4e-09 65.1 46 67.4
Cc05_g12330 Coffea canephora HOM05D002177 ORTHO05D002257 3.1e-09 64.7 46 69.6
Manes.15G085600 Manihot esculenta HOM05D002177 ORTHO05D002257 3.1e-09 64.7 46 67.4
Thecc.07G077400 Theobroma cacao HOM05D002177 ORTHO05D002257 3.1e-09 64.7 46 67.4
Lalb_Chr25g0286541 Lupinus albus HOM05D002177 ORTHO05D002257 4.1e-09 64.3 47 63.8
Oeu060543.1 Olea europaea HOM05D002177 ORTHO05D002257 4.1e-09 64.3 46 69.6
Atru.chr2.2731 Acer truncatum HOM05D002177 ORTHO05D002257 5.4e-09 63.9 47 66.0
HanXRQChr11g0328351 Helianthus annuus HOM05D002177 ORTHO05D002257 5.4e-09 63.9 46 63.0
unitig_747.g21570 Utricularia gibba HOM05D002177 ORTHO05D002257 5.4e-09 63.9 46 65.2
vmacro11842 Vaccinium macrocarpon HOM05D002177 ORTHO05D002257 5.4e-09 63.9 46 65.2
vmacro22798 Vaccinium macrocarpon HOM05D002177 ORTHO05D002257 5.4e-09 63.9 46 65.2
Eucgr.F01100 Eucalyptus grandis HOM05D002177 ORTHO05D002257 9.1e-09 63.2 46 67.4
Aqoxy1G02541 Aquilegia oxysepala HOM05D002177 ORTHO05D002257 1.2e-08 62.8 46 65.2
Manes.17G043600 Manihot esculenta HOM05D002177 ORTHO05D002257 1.2e-08 62.8 46 63.0
PSO210G4310 Papaver somniferum HOM05D002177 ORTHO05D002257 1.6e-08 62.4 46 65.2
PSO832G0279 Papaver somniferum HOM05D002177 ORTHO05D002257 1.6e-08 62.4 46 65.2
Actinidia07578 Actinidia chinensis HOM05D002177 ORTHO05D002257 2.0e-08 62.0 45 62.2
DCAR_013088 Daucus carota HOM05D002177 ORTHO05D002257 2.0e-08 62.0 46 65.2
TAR627G1091 Trochodendron aralioides HOM05D002177 ORTHO05D002257 2.0e-08 62.0 46 63.0
MSTRG.15217 Avicennia marina HOM05D002177 ORTHO05D002257 2.7e-08 61.6 46 65.2
CANSAT35G0199 Cannabis sativa HOM05D002177 ORTHO05D002257 2.7e-08 61.6 46 58.7
Hma1.2p1_0148F.1_g066210 Hydrangea macrophylla HOM05D002177 ORTHO05D002257 2.7e-08 61.6 46 65.2
MBI18_g17008_MAGBIO Magnolia biondii HOM05D002177 ORTHO05D002257 2.7e-08 61.6 46 60.9
Sabra11G0108000 Salix brachista HOM05D002177 ORTHO05D002257 2.7e-08 61.6 40 70.0
MSTRG.6843 Avicennia marina HOM05D002177 ORTHO05D002257 3.5e-08 61.2 46 67.4
Dinv40540 Davidia involucrata HOM05D002177 ORTHO05D002257 3.5e-08 61.2 45 64.4
Nitab4.5_0000207g0200 Nicotiana tabacum HOM05D002177 ORTHO05D002257 3.5e-08 61.2 46 67.4
Nitab4.5_0001320g0150 Nicotiana tabacum HOM05D002177 ORTHO05D002257 3.5e-08 61.2 46 67.4
Thecc.06G190400 Theobroma cacao HOM05D002177 ORTHO05D002257 3.5e-08 61.2 46 56.5
TWI38G0547 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 3.5e-08 61.2 46 65.2
TWI39G0451 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 3.5e-08 61.2 46 65.2
Duzib160G0085 Durio zibethinus HOM05D002177 ORTHO05D002257 4.5e-08 60.8 46 58.7
FvH4_3g20550 Fragaria vesca HOM05D002177 ORTHO05D002257 4.5e-08 60.8 46 63.0
FAN11G3911 Fragaria x ananassa HOM05D002177 ORTHO05D002257 4.5e-08 60.8 46 63.0
FAN25G0148 Fragaria x ananassa HOM05D002177 ORTHO05D002257 4.5e-08 60.8 46 63.0
Manes.16G025800 Manihot esculenta HOM05D002177 ORTHO05D002257 4.5e-08 60.8 45 62.2
Oeu005422.1 Olea europaea HOM05D002177 ORTHO05D002257 4.5e-08 60.8 45 71.1
Actinidia18760 Actinidia chinensis HOM05D002177 ORTHO05D002257 5.9e-08 60.5 47 70.2
Psat5g245000 Pisum sativum HOM05D002177 ORTHO05D002257 5.9e-08 60.5 46 63.0
CSS0010050 Camellia sinensis var. sinensis HOM05D002177 ORTHO05D002257 7.7e-08 60.1 45 66.7
Sed0008533 Sechium edule HOM05D002177 ORTHO05D002257 7.7e-08 60.1 46 54.3
GSVIVG01002034001 Vitis vinifera HOM05D002177 ORTHO05D002257 7.7e-08 60.1 46 60.9
Duzib209G0002 Durio zibethinus HOM05D002177 ORTHO05D002257 1.0e-07 59.7 46 56.5
Duzib235G0770 Durio zibethinus HOM05D002177 ORTHO05D002257 1.0e-07 59.7 46 56.5
ECA236G1049 Erigeron canadensis HOM05D002177 ORTHO05D002257 1.0e-07 59.7 48 62.5
PGSC0003DMG400025008 Solanum tuberosum HOM05D002177 ORTHO05D002257 1.0e-07 59.7 46 69.6
vmacro09542 Vaccinium macrocarpon HOM05D002177 ORTHO05D002257 1.0e-07 59.7 45 68.9
COL.COLO4_38192 Corchorus olitorius HOM05D002177 ORTHO05D002257 1.3e-07 59.3 46 52.2
Duzib192G0101 Durio zibethinus HOM05D002177 ORTHO05D002257 1.3e-07 59.3 46 56.5
TPR.G38957 Trifolium pratense HOM05D002177 ORTHO05D002257 1.3e-07 59.3 45 66.7
CSS0045805 Camellia sinensis var. sinensis HOM05D002177 ORTHO05D002257 1.7e-07 58.9 45 64.4
Ciclev10015412m.g Citrus clementina HOM05D002177 ORTHO05D002257 1.7e-07 58.9 45 60.0
SGA_v2.0_scaffold73G24293 Striga asiatica HOM05D002177 ORTHO05D002257 1.7e-07 58.9 45 64.4
Medtr2g079630 Medicago truncatula HOM05D002177 ORTHO05D002257 2.3e-07 58.5 45 62.2
RcHm_v2.0_Chr5g0034541 Rosa chinensis HOM05D002177 ORTHO05D002257 2.3e-07 58.5 46 58.7
Sopen10g002830 Solanum pennellii HOM05D002177 ORTHO05D002257 2.3e-07 58.5 46 67.4
FAN16G1871 Fragaria x ananassa HOM05D002177 ORTHO05D002257 2.9e-07 58.2 46 60.9
Hma1.2p1_0126F.1_g059270 Hydrangea macrophylla HOM05D002177 ORTHO05D002257 2.9e-07 58.2 45 62.2
Lj1A1207T79 Lonicera japonica HOM05D002177 ORTHO05D002257 2.9e-07 58.2 45 60.0
Oeu014703.1 Olea europaea HOM05D002177 ORTHO05D002257 2.9e-07 58.2 45 55.6
EL10Ac4g08122 Beta vulgaris HOM05D002177 ORTHO05D002257 3.8e-07 57.8 46 60.9
Hund02365 Selenicereus undatus HOM05D002177 ORTHO05D002257 3.8e-07 57.8 46 60.9
CSS0011671 Camellia sinensis var. sinensis HOM05D002177 ORTHO05D002257 5.0e-07 57.4 46 65.2
ClCG03G005930 Citrullus lanatus HOM05D002177 ORTHO05D002257 5.0e-07 57.4 46 56.5
Solyc10g006920.3 Solanum lycopersicum HOM05D002177 ORTHO05D002257 5.0e-07 57.4 46 65.2
TPR.G38942 Trifolium pratense HOM05D002177 ORTHO05D002257 5.0e-07 57.4 45 66.7
CiPaw.09G057700 Carya illinoinensis HOM05D002177 ORTHO05D002257 6.6e-07 57.0 47 57.4
Cpa.g.sc1598.1 Carica papaya HOM05D002177 ORTHO05D002257 8.6e-07 56.6 46 52.2
Peaxi162Scf00027g02811 Petunia axillaris HOM05D002177 ORTHO05D002257 8.6e-07 56.6 46 65.2
COL.COLO4_31498 Corchorus olitorius HOM05D002177 ORTHO05D002257 1.1e-06 56.2 46 50.0
CsaV3_6G050030 Cucumis sativus L. HOM05D002177 ORTHO05D002257 1.1e-06 56.2 45 60.0
MD03G1224200 Malus domestica HOM05D002177 ORTHO05D002257 1.1e-06 56.2 46 58.7
Nn1g06602 Nelumbo nucifera HOM05D002177 ORTHO05D002257 1.1e-06 56.2 46 60.9
Sed0022585 Sechium edule HOM05D002177 ORTHO05D002257 1.1e-06 56.2 46 56.5
SGA_v2.0_scaffold34G13730 Striga asiatica HOM05D002177 ORTHO05D002257 1.1e-06 56.2 46 60.9
CAN.G1110.50 Capsicum annuum HOM05D002177 ORTHO05D002257 1.5e-06 55.8 46 65.2
Gohir.A05G162100 Gossypium hirsutum HOM05D002177 ORTHO05D002257 1.5e-06 55.8 46 54.3
Medtr2g079650 Medicago truncatula HOM05D002177 ORTHO05D002257 1.5e-06 55.8 46 63.0
PSO541G4595 Papaver somniferum HOM05D002177 ORTHO05D002257 1.5e-06 55.8 48 58.3
PSO675G0287 Papaver somniferum HOM05D002177 ORTHO05D002257 1.5e-06 55.8 48 58.3
Ciclev10008537m.g Citrus clementina HOM05D002177 ORTHO05D002257 1.9e-06 55.5 47 63.8
Eucgr.D00638 Eucalyptus grandis HOM05D002177 ORTHO05D002257 1.9e-06 55.5 46 54.3
SalBow7G0025 Salvia bowleyana HOM05D002177 ORTHO05D002257 1.9e-06 55.5 46 60.9
vmacro15897 Vaccinium macrocarpon HOM05D002177 ORTHO05D002257 1.9e-06 55.5 48 60.4
FvH4_3g20540 Fragaria vesca HOM05D002177 ORTHO05D002257 2.5e-06 55.1 46 56.5
FAN11G2152 Fragaria x ananassa HOM05D002177 ORTHO05D002257 2.5e-06 55.1 46 56.5
FAN16G0080 Fragaria x ananassa HOM05D002177 ORTHO05D002257 2.5e-06 55.1 46 56.5
FAN21G0267 Fragaria x ananassa HOM05D002177 ORTHO05D002257 2.5e-06 55.1 46 56.5
FAN25G2964 Fragaria x ananassa HOM05D002177 ORTHO05D002257 2.5e-06 55.1 46 56.5
Sed0001769 Sechium edule HOM05D002177 ORTHO05D002257 2.5e-06 55.1 46 56.5
Gohir.D05G164900 Gossypium hirsutum HOM05D002177 ORTHO05D002257 4.2e-06 54.3 46 52.2
Gorai.009G170100 Gossypium raimondii HOM05D002177 ORTHO05D002257 4.2e-06 54.3 46 52.2
Sc03g0009880 Simmondsia chinensis HOM05D002177 ORTHO05D002257 4.2e-06 54.3 46 63.0
RcHm_v2.0_Chr6g0280011 Rosa chinensis HOM05D002177 ORTHO05D002257 5.5e-06 53.9 46 54.3
PGSC0003DMG400022383 Solanum tuberosum HOM05D002177 ORTHO05D002257 7.2e-06 53.5 45 55.6
arahy.Tifrunner.gnm1.ann1.HN3KPZ Arachis hypogaea HOM05D002177 ORTHO05D002257 9.5e-06 53.1 45 51.1
arahy.Tifrunner.gnm1.ann1.LK05G0 Arachis hypogaea HOM05D002177 ORTHO05D002257 9.5e-06 53.1 45 51.1
DCAR_008045 Daucus carota HOM05D002177 ORTHO05D002257 9.5e-06 53.1 45 51.1
Potri.004G041000 Populus trichocarpa HOM05D002177 ORTHO05D002257 9.5e-06 53.1 47 61.7


User provided reference genes

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