Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.9e-78 294.7 142 100.0
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.4e-66 255.0 142 83.1
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.6e-66 253.8 142 83.1
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 3.8e-65 251.5 141 83.0
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.9e-64 249.2 142 81.7
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.9e-64 249.2 142 81.7
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 3.2e-64 248.4 142 81.0
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 5.5e-64 247.7 141 81.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 7.1e-64 247.3 142 79.6
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 80.3
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 2.1e-63 245.7 142 80.3
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.1e-63 245.7 142 81.0
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 3.5e-63 245.0 142 79.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 3.5e-63 245.0 142 78.2
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 4.6e-63 244.6 140 80.7
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 6.0e-63 244.2 142 78.2
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 6.0e-63 244.2 142 78.2
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.3e-62 243.0 142 81.0
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.3e-62 242.3 142 81.0
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 3.0e-62 241.9 142 78.9
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 3.0e-62 241.9 142 78.9
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 5.1e-62 241.1 142 78.2
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.1e-62 241.1 142 78.2
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.7e-62 240.7 142 80.3
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.1e-61 240.0 142 78.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.5e-61 239.6 142 79.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.9e-61 239.2 142 77.5
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 3.3e-61 238.4 142 78.2
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.3e-61 238.4 141 77.3
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 4.3e-61 238.0 142 79.6
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 4.3e-61 238.0 142 76.8
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.7e-61 237.7 142 79.6
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 5.7e-61 237.7 142 77.5
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.4e-61 237.3 142 78.9
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 9.7e-61 236.9 142 76.8
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.8e-60 235.3 142 75.4
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.7e-60 235.0 141 77.3
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 76.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 78.2
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 75.4
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 75.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-59 233.4 141 75.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.1e-59 233.4 143 78.3
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.4e-59 232.3 141 76.6
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 4.1e-59 231.5 139 77.0
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.1e-59 231.5 142 75.4
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 74.6
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 75.4
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.6e-58 228.8 141 75.2
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.5e-58 228.0 139 77.7
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 73.9
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 71.1
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 73.2
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 71.8
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.2e-57 225.7 141 74.5
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 72.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 5.0e-57 224.6 141 73.0
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 72.5
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 72.5
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 72.5
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 73.9
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 6.5e-57 224.2 140 73.6
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.5e-57 224.2 138 75.4
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 8.5e-57 223.8 140 73.6
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 71.1
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 8.5e-57 223.8 140 71.4
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 71.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 71.1
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 71.1
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 71.1
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 70.4
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 70.4
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 71.8
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.9e-56 222.6 140 71.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 70.4
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 69.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.5e-56 222.2 142 69.7
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.1
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.8
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.1
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.8
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 71.1
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.2e-56 221.9 140 71.4
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 170 64.1
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 4.2e-56 221.5 193 59.6
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 4.2e-56 221.5 193 59.6
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 73.2
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 70.4
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 70.4
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 70.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.1e-55 219.2 141 73.8
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.1e-55 219.2 141 73.8
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.7e-55 218.8 141 73.8
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 72.5
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 71.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 68.3
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 6.1e-55 217.6 142 68.3
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 7.9e-55 217.2 138 74.6
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.3e-54 215.7 140 69.3
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 70.6
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.0e-54 215.3 142 71.8
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 3.9e-54 214.9 142 71.8
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.1e-53 213.4 158 65.2
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.5e-53 213.0 135 74.8
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.3e-53 211.8 141 69.5
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 72.3
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.3e-52 209.9 142 70.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.6e-52 209.5 142 68.3
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.2e-52 209.1 142 69.0
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 68.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.8e-51 206.1 138 71.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 68.1
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 65.5
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 9.1e-51 203.8 138 69.6
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.2e-50 203.4 143 69.2
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.2e-50 203.4 138 69.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.5e-50 203.0 140 70.0
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 2.0e-50 202.6 140 68.6
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 69.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.6e-50 202.2 138 68.8
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.6e-50 202.2 132 71.2
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 3.4e-50 201.8 157 63.1
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 5.9e-50 201.1 138 68.1
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 7.7e-50 200.7 132 70.5
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.0e-49 200.3 140 70.0
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.3e-49 199.9 141 66.7
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.7e-49 199.5 191 52.4
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.9e-49 198.7 142 67.6
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.8e-49 198.4 135 68.9
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 5.0e-49 198.0 117 78.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 5.0e-49 198.0 108 88.0
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 5.0e-49 198.0 138 67.4
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 5.0e-49 198.0 135 66.7
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 66.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 4.6e-47 191.4 140 70.0
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.8e-46 189.5 142 63.4
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.0e-46 188.7 142 63.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-45 186.8 175 56.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.6e-45 185.7 138 65.9
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.8e-44 181.4 143 62.9
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 8.5e-41 170.6 141 58.2
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.0e-38 163.7 141 58.2
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-38 162.2 138 60.1
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.5e-37 159.8 285 36.1
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 4.4e-37 158.3 140 54.3
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.4e-37 158.3 136 53.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 4.4e-37 158.3 125 61.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.3e-36 156.8 136 52.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.8e-36 154.8 129 57.4
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-35 153.7 129 56.6
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 2.2e-33 146.0 142 50.0
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-31 140.2 124 53.2
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 5.3e-27 124.8 126 48.4
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.5e-26 121.7 73 72.6
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 8.5e-25 117.5 80 66.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.5e-24 115.9 67 76.1
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 7.2e-24 114.4 80 65.0
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.0e-22 108.6 109 51.4
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.0e-22 108.6 109 51.4
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.0e-22 108.6 109 51.4
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.7e-20 103.2 77 67.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.2e-20 102.8 67 70.1
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 6.3e-20 101.3 87 57.5
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.8e-19 99.8 116 43.1
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.2e-18 97.1 77 58.4
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.5e-18 95.5 59 72.9
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.5e-18 95.5 59 72.9
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.5e-18 95.1 115 46.1
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.3e-17 93.6 121 43.8
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 5.5e-16 88.2 112 46.4
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 2.8e-15 85.9 68 60.3
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.0e-14 82.4 68 57.4
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 5.7e-13 78.2 115 43.5
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 5.9e-10 68.2 40 70.0
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.0e-09 67.4 120 35.0
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 1.3e-09 67.0 34 82.4
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.3e-09 66.2 40 80.0
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.3e-09 66.2 46 69.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.9e-09 65.9 34 79.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.1e-08 63.9 42 71.4
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 5.2e-06 55.1 71 42.3
TAR381G1165 Trochodendron aralioides HOM05D000503 ORTHO05D000361 5.2e-06 55.1 59 54.2
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.8e-06 54.7 38 68.4


User provided reference genes

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