Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 8.8e-111 403.7 209 100.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 8.3e-93 344.0 213 84.5
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.8e-92 342.8 212 82.1
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 3.1e-92 342.0 212 82.1
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 2.7e-91 339.0 213 83.1
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.9e-91 337.8 212 82.5
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 7.7e-91 337.4 212 82.5
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.0e-90 337.0 213 83.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.3e-90 336.7 211 82.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.3e-90 336.7 212 82.5
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.7e-90 336.3 213 81.7
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 2.2e-90 335.9 213 81.7
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 3.8e-90 335.1 212 83.0
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 3.8e-90 335.1 212 81.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.9e-89 332.8 217 81.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.5e-89 332.4 212 81.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 3.2e-89 332.0 213 82.2
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 4.2e-89 331.6 212 81.1
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 4.2e-89 331.6 213 82.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 9.4e-89 330.5 212 80.7
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 9.4e-89 330.5 211 81.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 9.4e-89 330.5 216 80.1
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 9.4e-89 330.5 213 82.2
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 9.4e-89 330.5 213 82.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 3.6e-88 328.6 213 80.8
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 4.7e-88 328.2 213 80.3
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 6.1e-88 327.8 213 80.3
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 6.1e-88 327.8 216 79.2
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.3e-87 325.9 216 80.6
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.0e-87 325.5 216 80.6
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 5.2e-87 324.7 216 80.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 5.2e-87 324.7 212 78.3
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 6.8e-87 324.3 213 79.8
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.8e-87 324.3 213 81.2
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 7.5e-86 320.9 212 80.7
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 1.3e-85 320.1 212 79.2
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.7e-85 319.7 212 79.7
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.2e-85 319.3 212 80.2
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 2.8e-85 318.9 212 79.2
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.7e-85 318.5 213 80.3
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 8.3e-85 317.4 212 79.2
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.4e-84 316.6 212 78.8
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.8e-84 316.2 213 77.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.8e-84 316.2 213 78.4
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 3.1e-84 315.5 212 79.2
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 4.1e-84 315.1 213 77.9
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 4.1e-84 315.1 212 79.2
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 5.4e-84 314.7 213 77.5
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 7.0e-84 314.3 212 78.8
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.2e-83 313.5 212 77.4
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.2e-83 313.5 213 77.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.2e-83 313.5 214 77.1
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.2e-83 313.5 214 77.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.6e-83 313.2 216 75.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 2.0e-83 312.8 213 79.3
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 7.7e-83 310.8 213 75.6
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-82 310.1 213 76.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.7e-82 309.7 213 75.1
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 2.3e-82 309.3 214 76.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 2.3e-82 309.3 211 76.3
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.8e-82 308.5 214 76.6
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-82 308.1 214 76.2
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-82 308.1 214 76.2
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 5.0e-82 308.1 214 76.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 5.0e-82 308.1 214 76.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 5.0e-82 308.1 216 75.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 6.6e-82 307.8 211 75.8
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 8.6e-82 307.4 208 76.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.5e-81 306.6 213 75.6
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.5e-81 306.6 216 75.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.9e-81 306.2 214 75.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.9e-81 306.2 214 76.2
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 2.5e-81 305.8 213 74.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 2.5e-81 305.8 211 75.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 3.3e-81 305.4 212 76.4
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 3.3e-81 305.4 211 76.8
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 5.5e-81 304.7 212 75.5
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 5.5e-81 304.7 209 76.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 9.5e-81 303.9 212 75.5
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 9.5e-81 303.9 211 74.9
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-80 303.5 217 74.2
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.2e-80 303.5 217 74.2
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.2e-80 303.5 217 74.2
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-80 302.8 217 74.2
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.1e-80 302.8 212 75.0
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 2.1e-80 302.8 216 76.4
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 2.1e-80 302.8 216 73.1
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.1e-80 302.8 214 75.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.8e-80 302.4 212 73.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 4.7e-80 301.6 218 74.3
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 4.7e-80 301.6 218 74.3
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 6.1e-80 301.2 212 75.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 6.1e-80 301.2 214 74.3
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.0e-79 300.4 214 75.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.4e-79 300.1 214 73.4
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.4e-79 300.1 216 72.7
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 2.3e-79 299.3 211 73.9
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 3.0e-79 298.9 214 72.9
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 5.2e-79 298.1 213 74.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.2e-78 297.0 212 73.6
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.2e-78 297.0 212 74.1
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.5e-78 296.6 213 74.6
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 7.5e-78 294.3 211 73.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.3e-77 291.2 211 73.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.4e-76 290.0 216 73.1
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.4e-76 290.0 211 72.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.8e-76 289.7 218 74.3
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.3e-74 283.5 212 70.8
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.3e-69 266.9 216 66.7
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.7e-69 266.5 211 69.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.9e-69 265.0 215 64.2
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.1e-68 263.8 216 65.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.1e-65 253.8 204 67.6
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.2e-64 250.4 215 64.2
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.2e-64 248.1 212 66.5
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 8.9e-63 244.2 212 64.6
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 9.8e-62 240.7 213 64.3
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.3e-61 240.4 200 65.0
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.7e-53 213.4 204 56.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.7e-53 213.4 204 56.4
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.4e-53 211.5 215 54.4
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.9e-50 202.2 202 56.4
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.6e-50 201.4 204 55.9
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.5e-49 199.5 212 56.1
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.0e-46 189.9 216 48.1
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-46 188.3 133 72.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 8.4e-45 184.5 239 50.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.0e-39 165.6 159 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.0e-38 163.3 176 51.7
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.8e-38 161.8 181 54.1
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.9e-37 159.5 104 76.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 3.8e-37 159.1 155 58.1
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.3e-31 138.7 230 38.7
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.4e-22 109.4 162 43.2
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.4e-21 104.8 112 54.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-20 104.4 84 60.7
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.3e-17 92.8 107 48.6
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.2e-13 80.1 77 57.1
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-11 74.3 50 76.0
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.7e-10 68.6 60 55.0
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.6e-06 56.6 55 58.2


User provided reference genes

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