Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33804 Davidia involucrata HOM05D000100 ORTHO05D004702 5.4e-142 507.7 262 100.0
CSS0024320 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 3.6e-61 239.2 196 64.8
CSS0016013 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 2.2e-58 229.9 197 64.0
Lj4C115T14 Lonicera japonica HOM05D000100 ORTHO05D004702 2.8e-58 229.6 183 67.2
Thecc.04G090100 Theobroma cacao HOM05D000100 ORTHO05D004702 4.0e-52 209.1 197 58.4
Duzib147G0540 Durio zibethinus HOM05D000100 ORTHO05D004702 5.2e-52 208.8 183 61.2
COL.COLO4_07432 Corchorus olitorius HOM05D000100 ORTHO05D004702 6.8e-52 208.4 184 59.8
Prupe.3G260100 Prunus persica HOM05D000100 ORTHO05D004702 9.8e-51 204.5 183 58.5
QL02p039350 Quercus lobata HOM05D000100 ORTHO05D004702 9.8e-51 204.5 182 60.4
Prupe.3G260000 Prunus persica HOM05D000100 ORTHO05D004702 6.3e-50 201.8 184 60.3
MD17G1055700 Malus domestica HOM05D000100 ORTHO05D004702 7.0e-49 198.4 182 58.8
RcHm_v2.0_Chr2g0166701 Rosa chinensis HOM05D000100 ORTHO05D004702 1.7e-47 193.7 184 58.7
Manes.09G159600 Manihot esculenta HOM05D000100 ORTHO05D004702 5.0e-47 192.2 195 54.9
RcHm_v2.0_Chr2g0166671 Rosa chinensis HOM05D000100 ORTHO05D004702 5.0e-47 192.2 184 58.2
Oeu062141.1 Olea europaea HOM05D000100 ORTHO05D004702 8.6e-47 191.4 182 58.8
Peaxi162Scf00166g00826 Petunia axillaris HOM05D000100 ORTHO05D004702 8.6e-47 191.4 183 55.7
FAN14G5013 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.1e-46 191.0 182 56.0
FvH4_6g47570 Fragaria vesca HOM05D000100 ORTHO05D004702 1.9e-46 190.3 184 56.5
Gohir.D04G045500 Gossypium hirsutum HOM05D000100 ORTHO05D004702 1.9e-46 190.3 193 54.9
Gohir.A05G369800 Gossypium hirsutum HOM05D000100 ORTHO05D004702 4.3e-46 189.1 195 53.8
Dinv11491 Davidia involucrata HOM05D000100 ORTHO05D004702 5.6e-46 188.7 454 35.2
Gorai.012G050700 Gossypium raimondii HOM05D000100 ORTHO05D004702 5.6e-46 188.7 195 54.4
FAN09G3446 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.2e-45 187.6 184 56.0
FvH4_6g47580 Fragaria vesca HOM05D000100 ORTHO05D004702 1.6e-45 187.2 184 56.5
Rhsim10G0047000 Rhododendron simsii HOM05D000100 ORTHO05D004702 1.8e-44 183.7 182 56.6
vmacro05669 Vaccinium macrocarpon HOM05D000100 ORTHO05D004702 4.4e-43 179.1 182 56.0
Dinv33803 Davidia involucrata HOM05D000100 ORTHO05D004702 9.8e-43 177.9 284 40.8
Cc03_g14830 Coffea canephora HOM05D000100 ORTHO05D004702 1.3e-42 177.6 203 53.2
Sopen02g033250 Solanum pennellii HOM05D000100 ORTHO05D004702 1.3e-42 177.6 185 55.7
Cc03_g14880 Coffea canephora HOM05D000009 ORTHO05D004702 1.7e-42 177.2 202 52.5
PGSC0003DMG400039917 Solanum tuberosum HOM05D000100 ORTHO05D004702 2.2e-42 176.8 185 55.1
Eucgr.D01288 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.4e-41 174.1 182 52.2
Eucgr.E03236 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.9e-41 173.7 182 51.6
CSS0029818 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 3.5e-40 169.5 185 57.3
Sc11g0004830 Simmondsia chinensis HOM05D000100 ORTHO05D004702 4.6e-40 169.1 180 50.6
Migut.H00660 Erythranthe guttata HOM05D000100 ORTHO05D004702 6.0e-40 168.7 186 51.6
Migut.H00659 Erythranthe guttata HOM05D000100 ORTHO05D004702 1.7e-39 167.2 186 51.6
DCAR_021666 Daucus carota HOM05D000100 ORTHO05D004702 6.6e-39 165.2 188 51.6
Sc11g0004820 Simmondsia chinensis HOM05D000100 ORTHO05D004702 4.3e-38 162.5 184 51.6
Hma1.2p1_1813F.1_g303870 Hydrangea macrophylla HOM05D000100 ORTHO05D004702 6.2e-37 158.7 186 54.3
Atru.chr11.1687 Acer truncatum HOM05D000100 ORTHO05D004702 8.0e-37 158.3 183 49.2
Eucgr.E03234 Eucalyptus grandis HOM05D000100 ORTHO05D004702 8.0e-37 158.3 183 49.2
PGR083G2848 Punica granatum HOM05D000100 ORTHO05D004702 8.0e-37 158.3 182 47.3
Ciclev10031419m.g Citrus clementina HOM05D000100 ORTHO05D004702 1.1e-36 157.9 184 47.8
Lj4C115T12 Lonicera japonica HOM05D000100 ORTHO05D004702 2.0e-35 153.7 173 53.2
QL02p073358 Quercus lobata HOM05D000100 ORTHO05D004702 2.0e-35 153.7 323 36.5
EL10Ac2g03497 Beta vulgaris HOM05D000100 ORTHO05D004702 4.4e-35 152.5 198 43.4
Psat2g128120 Pisum sativum HOM05D000100 ORTHO05D004702 4.4e-35 152.5 198 44.4
PGR083G1316 Punica granatum HOM05D000100 ORTHO05D004702 1.3e-34 151.0 184 45.7
Atru.chr11.1686 Acer truncatum HOM05D000100 ORTHO05D004702 1.7e-34 150.6 181 48.1
Lalb_Chr17g0341021 Lupinus albus HOM05D000100 ORTHO05D004702 1.7e-34 150.6 181 47.5
Thecc.02G336200 Theobroma cacao HOM05D000100 ORTHO05D004702 1.7e-34 150.6 185 47.0
Eucgr.E03232 Eucalyptus grandis HOM05D000100 ORTHO05D004702 2.2e-34 150.2 190 46.8
SalBow1G3072 Salvia bowleyana HOM05D000100 ORTHO05D004702 2.9e-34 149.8 184 50.0
SGA_v2.0_scaffold413G51162 Striga asiatica HOM05D000100 ORTHO05D004702 3.7e-34 149.4 195 45.6
TWI75G1492 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 1.9e-33 147.1 180 46.7
Thecc.02G335900 Theobroma cacao HOM05D000100 ORTHO05D004702 2.4e-33 146.7 180 46.1
CiPaw.06G090200 Carya illinoinensis HOM05D000100 ORTHO05D004702 4.1e-33 146.0 180 45.6
AUR62018135 Chenopodium quinoa HOM05D000100 ORTHO05D004702 7.1e-33 145.2 180 46.1
TWI75G0577 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 9.2e-33 144.8 182 47.8
Cfa008904 Carpinus fangiana HOM05D000100 ORTHO05D004702 1.6e-32 144.1 181 45.9
Aqoxy3G03555 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 7.8e-32 141.7 183 47.0
arahy.Tifrunner.gnm1.ann1.5S4EZI Arachis hypogaea HOM05D000100 ORTHO05D004702 7.8e-32 141.7 179 48.6
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 1.0e-31 141.4 181 45.3
Eucgr.E03231 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.0e-31 141.4 182 45.6
Nn2g12291 Nelumbo nucifera HOM05D000100 ORTHO05D004702 3.0e-31 139.8 179 44.7
Lj2g0007579 Lotus japonicus HOM05D000100 ORTHO05D004702 5.1e-31 139.0 181 45.9
CANSAT01G2651 Cannabis sativa HOM05D000100 ORTHO05D004702 6.6e-31 138.7 184 44.6
Cfa008906 Carpinus fangiana HOM05D000100 ORTHO05D004702 6.6e-31 138.7 181 44.8
Duzib268G1512 Durio zibethinus HOM05D000100 ORTHO05D004702 8.6e-31 138.3 180 45.6
MBI16_g15565_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D004702 1.1e-30 137.9 182 47.3
unitig_744.g24269 Utricularia gibba HOM05D000100 ORTHO05D004702 1.1e-30 137.9 191 46.1
ECA246G1680 Erigeron canadensis HOM05D001596 ORTHO05D007454 1.5e-30 137.5 142 52.8
Eucgr.E03233 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.9e-30 137.1 166 48.2
DCAR_025404 Daucus carota HOM05D000100 ORTHO05D004702 2.5e-30 136.7 175 46.3
ClCG05G023870 Citrullus lanatus HOM05D000100 ORTHO05D004702 3.3e-30 136.3 179 46.4
Glyma.16G212000 Glycine max HOM05D000100 ORTHO05D004702 3.3e-30 136.3 185 44.9
Thecc.02G336100 Theobroma cacao HOM05D000100 ORTHO05D004702 3.3e-30 136.3 184 43.5
PSO528G0286 Papaver somniferum HOM05D000100 ORTHO05D004702 4.3e-30 136.0 182 45.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 5.6e-30 135.6 180 43.3
Actinidia26242 Actinidia chinensis HOM05D000100 ORTHO05D004702 9.5e-30 134.8 167 50.3
CsaV3_5G033150 Cucumis sativus L. HOM05D000100 ORTHO05D004702 9.5e-30 134.8 180 46.7
Lj2g0020882 Lotus japonicus HOM05D000100 ORTHO05D004702 9.5e-30 134.8 182 44.0
PGR083G1384 Punica granatum HOM05D000100 ORTHO05D004702 9.5e-30 134.8 166 46.4
Sopen02g033210 Solanum pennellii HOM05D000100 ORTHO05D004702 9.5e-30 134.8 171 47.4
Haze_11933 Corylus avellana HOM05D002318 ORTHO05D004713 1.2e-29 134.4 181 45.3
Rhsim08G0073000 Rhododendron simsii HOM05D000100 ORTHO05D004702 1.6e-29 134.0 180 44.4
CiPaw.06G090300 Carya illinoinensis HOM05D000100 ORTHO05D004702 2.1e-29 133.7 179 41.9
MELO3C012135.2 Cucumis melo HOM05D000100 ORTHO05D004702 4.7e-29 132.5 179 46.4
Medtr5g043630 Medicago truncatula HOM05D000100 ORTHO05D004702 8.1e-29 131.7 173 43.9
Nn3g17373 Nelumbo nucifera HOM05D000100 ORTHO05D004702 1.1e-28 131.3 172 44.8
Eucgr.J01468 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.4e-28 131.0 187 41.7
Glyma.09G162400 Glycine max HOM05D000100 ORTHO05D004702 2.3e-28 130.2 178 46.6
Solyc02g088500.1 Solanum lycopersicum HOM05D000100 ORTHO05D004702 2.3e-28 130.2 171 45.6
TPR.G39983 Trifolium pratense HOM05D000100 ORTHO05D004702 2.3e-28 130.2 178 44.4
Migut.H00661 Erythranthe guttata HOM05D000100 ORTHO05D004702 8.9e-28 128.3 187 44.9
Medtr6g078320 Medicago truncatula HOM05D000100 ORTHO05D004702 8.9e-28 128.3 208 38.9
Ca_18817_v3 Cicer arietinum L. HOM05D000100 ORTHO05D004702 1.2e-27 127.9 178 44.9
Nitab4.5_0000565g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 1.2e-27 127.9 171 45.0
VMungo0464G0024 Vigna mungo HOM05D000100 ORTHO05D004702 1.5e-27 127.5 176 42.0
Aqoxy3G03556 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 2.0e-27 127.1 174 46.6
Manes.02G050500 Manihot esculenta HOM05D000100 ORTHO05D004702 3.4e-27 126.3 174 44.3
PGSC0003DMG400038989 Solanum tuberosum HOM05D000100 ORTHO05D004702 7.6e-27 125.2 171 45.0
Phvul.004G138450 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 1.3e-26 124.4 174 43.1
Prupe.3G260200 Prunus persica HOM05D000100 ORTHO05D004702 1.3e-26 124.4 174 42.5
Medtr4g082820 Medicago truncatula HOM05D000100 ORTHO05D004702 1.7e-26 124.0 179 43.6
Phvul.004G138400 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 1.7e-26 124.0 174 43.1
RcHm_v2.0_Chr2g0166721 Rosa chinensis HOM05D000100 ORTHO05D004702 1.7e-26 124.0 182 44.0
Sed0003026 Sechium edule HOM05D000100 ORTHO05D004702 1.7e-26 124.0 186 39.2
Sed0019811 Sechium edule HOM05D000100 ORTHO05D004702 1.7e-26 124.0 181 44.8
Nitab4.5_0008573g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 2.2e-26 123.6 168 44.0
EL10Ac2g03041 Beta vulgaris HOM05D000100 ORTHO05D004702 4.9e-26 122.5 165 41.8
COL.COLO4_27928 Corchorus olitorius HOM05D000100 ORTHO05D004702 8.3e-26 121.7 184 40.2
FvH4_6g47620 Fragaria vesca HOM05D000100 ORTHO05D004702 8.3e-26 121.7 174 42.5
Phvul.004G137900 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 1.1e-25 121.3 174 40.8
VMungo0464G0240 Vigna mungo HOM05D000100 ORTHO05D004702 1.4e-25 120.9 175 41.1
VMungo0464G1323 Vigna mungo HOM05D000100 ORTHO05D004702 1.9e-25 120.6 174 40.8
CANSAT64G1162 Cannabis sativa HOM05D000100 ORTHO05D004702 2.4e-25 120.2 177 41.8
Zm00001eb280930 Zea mays HOM05D000100 ORTHO05D004702 2.4e-25 120.2 181 37.6
FAN05G0827 Fragaria x ananassa HOM05D000100 ORTHO05D004702 4.1e-25 119.4 174 41.4
Medtr4g082810 Medicago truncatula HOM05D000100 ORTHO05D004702 5.4e-25 119.0 181 38.1
Gohir.A13G080100 Gossypium hirsutum HOM05D000100 ORTHO05D004702 7.1e-25 118.6 191 41.4
Potri.017G089000 Populus trichocarpa HOM05D000100 ORTHO05D004702 2.1e-24 117.1 187 37.4
Potri.004G126000 Populus trichocarpa HOM05D000100 ORTHO05D004702 3.5e-24 116.3 224 36.2
Sabra04G0066700 Salix brachista HOM05D000100 ORTHO05D004702 3.5e-24 116.3 224 36.6
Os06g0288300 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 1.7e-23 114.0 183 41.0
PGR083G0325 Punica granatum HOM05D000100 ORTHO05D004702 1.7e-23 114.0 169 40.2
FAN14G0486 Fragaria x ananassa HOM05D000100 ORTHO05D004702 2.3e-23 113.6 174 40.8
FAN14G3309 Fragaria x ananassa HOM05D000100 ORTHO05D004702 2.3e-23 113.6 174 40.8
Zm00001eb280950 Zea mays HOM05D000100 ORTHO05D004702 2.3e-23 113.6 181 37.6
Os06g0289200 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 3.0e-23 113.2 184 40.2
RcHm_v2.0_Chr4g0438831 Rosa chinensis HOM05D000100 ORTHO05D004702 1.9e-22 110.5 140 49.3
Sabra17G0078700 Salix brachista HOM05D000100 ORTHO05D004702 2.5e-22 110.2 196 37.8
FAN09G0588 Fragaria x ananassa HOM05D000100 ORTHO05D004702 4.3e-22 109.4 132 47.0
Eucgr.E03235 Eucalyptus grandis HOM05D000100 ORTHO05D004702 7.3e-22 108.6 182 37.9
Nn4g23330 Nelumbo nucifera HOM05D000100 ORTHO05D004702 3.1e-20 103.2 182 38.5
Zm00001eb380880 Zea mays HOM05D000100 ORTHO05D004702 4.0e-20 102.8 183 37.7
Zm00001eb381410 Zea mays HOM05D000100 ORTHO05D004702 4.0e-20 102.8 183 37.7
Zm00001eb280920 Zea mays HOM05D000100 ORTHO05D004702 6.8e-20 102.1 183 38.3
Os06g0289900 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 2.0e-19 100.5 180 33.9
CSS0031209 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 1.3e-18 97.8 177 36.7
COL.COLO4_27929 Corchorus olitorius HOM05D000100 ORTHO05D004702 1.1e-17 94.7 315 26.0
ATR0111G030 Amborella trichopoda HOM05D000100 ORTHO05D004702 4.2e-17 92.8 182 37.4
QL03p070950 Quercus lobata HOM05D000100 ORTHO05D004702 3.5e-16 89.7 101 49.5
HPP92_026691 Vanilla planifolia HOM05D000100 ORTHO05D004702 1.7e-15 87.4 180 37.2
MD16G1064500 Malus domestica HOM05D000100 ORTHO05D004702 3.9e-15 86.3 195 38.5
unitig_744.g24271 Utricularia gibba HOM05D000100 ORTHO05D030565 2.5e-14 83.6 93 52.7
Rhsim10G0034200 Rhododendron simsii HOM05D000100 ORTHO05D004702 3.6e-13 79.7 62 58.1
Phvul.004G138200 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 4.0e-12 76.3 126 33.3
SEGI_06000 Sequoiadendron giganteum HOM05D000100 ORTHO05D000052 1.5e-11 74.3 193 35.8
Nn1g09114 Nelumbo nucifera HOM05D000100 ORTHO05D004702 3.4e-11 73.2 132 39.4
SalBow4G2413 Salvia bowleyana HOM05D000100 ORTHO05D030565 5.8e-11 72.4 91 48.4
SalBow1G8205 Salvia bowleyana HOM05D000100 ORTHO05D004702 1.9e-09 67.4 174 33.9
FAN05G2715 Fragaria x ananassa HOM05D000100 ORTHO05D004702 4.2e-09 66.2 73 49.3
SalBow5G2907 Salvia bowleyana HOM05D003262 ORTHO05D030565 2.7e-08 63.5 76 48.7
Thecc.04G090000 Theobroma cacao HOM05D000100 ORTHO05D004702 2.3e-07 60.5 66 45.5
AUR62034474 Chenopodium quinoa HOM05D000100 ORTHO05D004702 1.9e-06 57.4 59 45.8
Ciclev10013670m.g Citrus clementina HOM05D000100 ORTHO05D004702 2.5e-06 57.0 119 37.8
SalBow8G0546 Salvia bowleyana HOM05D000100 ORTHO05D030565 2.5e-06 57.0 76 46.1
Cpa.g.sc3.380 Carica papaya HOM05D000100 ORTHO05D004702 3.3e-06 56.6 177 30.5
Sc01g0001960 Simmondsia chinensis HOM05D000100 ORTHO05D000052 4.3e-06 56.2 183 30.1


User provided reference genes

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