Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.3e-29 132.5 70 100.0
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 1.6e-16 89.0 52 90.4
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 6.1e-16 87.0 52 84.6
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 8.0e-16 86.7 52 82.7
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 8.0e-16 86.7 52 82.7
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 3.9e-15 84.3 51 80.4
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 6.7e-15 83.6 52 78.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.5e-14 82.4 52 76.9
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.0e-14 82.0 52 82.7
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 2.6e-14 81.6 52 76.9
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 4.4e-14 80.9 52 78.8
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 5.7e-14 80.5 52 75.0
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 5.7e-14 80.5 52 75.0
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 6.3e-13 77.0 49 77.6
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.3e-13 77.0 49 77.6
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.3e-13 77.0 65 63.1
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 6.3e-13 77.0 49 77.6
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.1e-12 76.3 65 61.5
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 2.4e-12 75.1 52 69.2
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 5.3e-12 73.9 52 71.2
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 7.0e-12 73.6 52 69.2
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 9.1e-12 73.2 52 71.2
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 2.0e-11 72.0 52 67.3
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.0e-11 72.0 48 75.0
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 2.6e-11 71.6 49 75.5
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 3.5e-11 71.2 52 69.2
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 3.5e-11 71.2 52 67.3
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 3.5e-11 71.2 52 65.4
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 4.5e-11 70.9 52 71.2
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 5.9e-11 70.5 52 65.4
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.0e-10 69.7 51 70.6
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.0e-10 69.7 52 65.4
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 5.0e-10 67.4 61 60.7
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 8.5e-10 66.6 52 65.4
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 8.5e-10 66.6 52 65.4
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.5e-09 65.9 52 65.4
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.5e-09 65.9 50 58.0
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 2.5e-09 65.1 52 59.6
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 7.2e-09 63.5 48 68.8
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 1.6e-08 62.4 45 71.1
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 1.6e-08 62.4 45 71.1
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 2.1e-08 62.0 48 66.7
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 2.7e-08 61.6 60 56.7
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 2.7e-08 61.6 46 65.2
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 3.6e-08 61.2 49 59.2
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 3.6e-08 61.2 49 61.2
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 6.1e-08 60.5 49 59.2
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 8.0e-08 60.1 50 58.0
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 8.0e-08 60.1 50 58.0
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 8.0e-08 60.1 50 58.0
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 8.0e-08 60.1 50 58.0
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.4e-07 59.3 50 58.0
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.8e-07 58.9 50 56.0
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.8e-07 58.9 50 56.0
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.8e-07 58.9 50 56.0
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-07 58.5 50 56.0
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 3.0e-07 58.2 50 54.0
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 4.0e-07 57.8 50 58.0
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 4.0e-07 57.8 50 58.0
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 4.0e-07 57.8 48 58.3
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 5.2e-07 57.4 50 56.0
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 5.2e-07 57.4 50 56.0
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 5.2e-07 57.4 52 55.8
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 6.7e-07 57.0 50 54.0
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 8.8e-07 56.6 50 54.0
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 8.8e-07 56.6 50 56.0
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 1.2e-06 56.2 50 54.0
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 1.2e-06 56.2 50 54.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 1.5e-06 55.8 50 54.0
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.5e-06 55.8 50 54.0
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.5e-06 55.8 50 54.0
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 1.5e-06 55.8 46 63.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 4.4e-06 54.3 50 54.0


User provided reference genes

Program Settings