Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 4464.4 2224 100.0
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 3525.3 2229 79.9
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 3459.8 2229 78.8
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3349.7 2229 76.7
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 3246.1 2251 73.8
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3231.0 2233 73.6
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3215.6 2233 73.4
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 3142.8 2235 72.3
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 3108.5 2237 71.3
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 3107.4 2237 71.2
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 3097.4 2236 70.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3092.0 2233 71.1
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 3067.7 2237 71.0
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 3064.6 2241 70.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3058.1 2236 69.5
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3032.3 2235 69.2
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2995.3 2200 69.8
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2984.1 2231 68.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2973.7 2242 68.6
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2948.3 2239 68.2
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2926.7 2242 67.8
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2917.9 2243 67.5
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2907.1 2237 66.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2901.7 2240 67.6
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2901.3 2234 67.2
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2901.3 2240 67.5
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2895.5 2256 66.5
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2885.9 2233 67.1
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2843.5 2236 66.2
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2840.8 2243 65.9
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2828.9 2236 65.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2823.5 2240 65.0
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2822.7 2236 65.3
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2813.9 2236 65.3
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2781.5 2238 64.5
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2780.7 2231 65.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2777.7 2249 64.7
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2776.1 2234 64.4
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2772.3 2237 64.1
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2771.5 2237 64.4
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2753.8 2238 63.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2752.2 2228 64.0
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2749.2 2251 64.6
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2746.5 2325 63.2
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2741.1 2233 64.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2732.2 2237 63.9
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2730.7 2233 63.7
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2717.2 2242 63.9
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2707.9 2262 64.0
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2689.4 2243 63.0
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2688.7 2248 63.4
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2686.4 2244 63.0
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2684.8 2242 62.9
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2660.6 2243 62.4
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2659.4 2247 63.1
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2650.5 2237 62.5
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2644.8 2241 62.8
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2637.8 2246 62.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2637.4 2239 62.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2632.4 2239 62.4
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2631.7 2237 62.2
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2631.7 2243 61.2
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2625.1 2232 62.5
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2625.1 2243 62.3
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2624.4 2237 62.4
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2615.5 2233 61.8
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2585.1 1829 71.9
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2580.1 2240 60.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2523.0 2272 59.6
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2512.3 1897 68.2
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2508.8 1829 70.7
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2487.2 2246 60.2
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2480.7 2243 59.9
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2480.7 2246 60.1
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2473.7 2244 60.0
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2469.5 2246 59.6
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2469.5 2246 59.6
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2469.1 2244 59.8
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2469.1 2244 59.8
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2451.4 2253 59.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2444.1 2243 59.3
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2421.0 1835 68.3
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2372.0 2211 59.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2347.0 2246 57.7
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2308.5 2074 60.6
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2296.5 2329 54.1
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2296.5 1718 69.7
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2176.4 2261 53.5
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2132.1 2245 53.1
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1953.3 1430 71.2
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1868.6 2386 45.6
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1862.4 1395 69.6
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1644.4 1709 54.0
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1505.7 2371 40.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1483.4 2193 42.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1443.3 2379 39.0
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1376.3 1066 67.6
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1360.1 1024 67.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1349.3 1125 63.5
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1328.5 2279 37.4
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1322.4 1205 60.0
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1261.1 943 68.0
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1168.3 1431 48.4
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1149.4 790 74.9
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1138.3 1020 61.4
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.9e-276 956.8 3182 27.4
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 5.4e-243 846.3 878 53.4
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.7e-239 833.6 739 59.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.9e-218 762.7 1329 38.7
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 7.5e-184 649.8 1019 42.3
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 4.4e-160 570.9 450 63.8
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 9.8e-160 569.7 2550 25.5
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.8e-114 418.7 377 57.6
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.0e-92 347.1 338 55.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-83 317.0 314 53.5
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 2.5e-78 299.3 772 30.6
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 4.0e-76 292.0 290 58.6
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-73 283.1 234 61.1
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 5.9e-72 278.1 326 48.5
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 7.7e-64 251.1 233 56.7
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 1.3e-58 233.8 282 48.6
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 7.3e-54 218.0 172 69.2
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 9.8e-43 181.0 223 46.6
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 6.4e-42 178.3 140 67.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 5.6e-38 165.2 146 59.6
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.8e-36 160.2 487 29.0
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 9.9e-35 154.5 94 80.9
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 9.2e-33 147.9 118 62.7
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.5e-30 139.8 255 36.5
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 4.4e-27 129.0 98 63.3
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 2.9e-26 126.3 113 65.5
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.1e-17 97.8 829 21.1
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.6e-16 94.0 104 48.1


User provided reference genes

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