Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 3981.8 2021 100.0
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 3212.9 2015 81.7
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2986.8 2021 76.7
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2986.8 2045 76.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2954.5 1695 89.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2926.0 2024 75.1
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2914.4 2068 73.8
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2885.5 2144 71.8
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2880.9 2024 75.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2858.6 2025 73.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2848.5 2031 73.4
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2816.6 2024 73.2
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2794.2 2029 72.3
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2791.1 2035 72.0
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2787.7 2024 72.4
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2784.6 1867 77.0
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2763.0 2027 72.4
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2741.1 2023 71.9
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2732.2 2021 71.4
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2709.5 2024 71.4
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2704.5 2039 70.8
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2692.1 2060 70.9
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2692.1 2091 69.1
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2678.3 2022 69.8
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2673.3 2028 69.9
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2672.1 2022 69.7
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2671.3 2036 69.6
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2671.0 2022 70.1
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2670.6 2024 70.0
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2664.8 2031 69.8
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2658.6 2037 70.0
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2650.9 2032 70.3
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2649.4 2020 68.9
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2645.5 2033 69.5
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2644.0 2069 69.0
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2640.9 2017 69.2
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2640.9 2017 69.3
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2620.1 2034 69.2
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2617.0 2037 68.4
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2613.2 2022 68.5
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2611.6 2023 68.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2600.5 2014 69.8
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2597.8 2034 68.6
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2594.3 2033 67.2
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2593.5 2095 67.5
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2591.6 2023 68.0
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2589.7 2133 65.4
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2589.3 2022 68.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2583.9 2041 67.7
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2573.1 2026 67.8
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2557.7 2025 67.6
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2546.5 2018 67.7
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2529.2 2028 66.8
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2528.8 2042 67.7
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2527.3 2037 66.2
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2520.3 2025 67.3
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2518.4 2094 64.1
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2499.5 2024 64.3
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2493.8 2026 65.5
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2490.7 2030 67.0
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2474.5 2134 63.4
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2444.5 2024 65.3
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2421.4 1915 69.1
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2414.4 2018 62.8
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2413.3 2033 65.6
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2412.5 2024 63.8
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2342.8 2030 62.3
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2335.8 1897 66.1
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2331.2 2026 62.3
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2329.7 2045 63.3
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2328.9 2028 62.1
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2327.4 2028 62.2
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2316.2 2025 61.9
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2315.8 2027 61.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2277.7 2065 62.7
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2266.1 2043 60.5
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2266.1 2188 59.1
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2260.0 1815 65.7
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2258.0 2022 60.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2244.2 2053 60.1
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2240.7 2021 60.7
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2231.4 2018 60.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2224.9 2022 60.1
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2224.1 2036 60.3
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2218.4 2050 59.5
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2208.7 2020 59.9
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2205.6 2053 59.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2151.3 1790 64.4
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2097.4 1698 65.3
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 2056.6 2017 57.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 2012.7 1374 77.0
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1985.3 2073 55.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1948.3 1465 71.3
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1944.9 1730 63.4
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1887.5 1496 66.9
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1718.4 2048 50.1
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1691.8 1211 73.9
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1671.8 2066 49.5
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1598.9 1238 67.0
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1536.9 1911 47.3
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1434.9 1195 65.9
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1406.7 1602 49.2
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1313.9 1428 51.8
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1204.5 779 78.4
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1204.5 777 79.3
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1164.4 779 76.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.6e-308 1063.1 844 64.7
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.9e-304 1049.7 1055 56.0
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.2e-300 1037.7 1218 50.2
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.5e-289 999.6 982 55.7
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.3e-283 981.1 1297 48.3
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.0e-276 957.2 2187 34.6
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.6e-273 947.6 2191 33.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-214 751.5 1025 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.4e-213 748.4 2022 32.2
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.6e-201 708.4 654 61.8
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 6.8e-192 676.4 430 76.7
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 7.3e-186 656.4 568 62.5
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 4.0e-184 650.6 1963 30.6
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.5e-183 648.7 1672 31.7
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.9e-178 631.7 595 56.3
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.5e-154 551.6 320 84.7
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 4.8e-153 547.4 521 59.3
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.6e-140 504.2 777 43.1
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 7.9e-132 476.9 319 78.1
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 3.5e-124 451.4 536 49.4
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.4e-119 434.9 382 66.0
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.9e-107 394.8 244 81.1
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.6e-103 382.1 444 49.1
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.8e-97 362.1 288 67.7
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.4e-96 359.8 235 78.3
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.8e-96 359.4 382 50.8
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 7.0e-96 357.5 294 66.3
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.6e-92 346.3 242 75.2
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 7.7e-87 327.4 195 82.1
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 4.1e-80 305.1 300 56.3
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.6e-76 293.1 428 46.0
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 4.4e-74 285.0 191 75.9
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.2e-73 282.7 975 29.3
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 6.6e-70 271.2 262 58.0
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 8.6e-70 270.8 184 73.9
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.4e-67 263.5 188 72.3
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-67 260.8 1116 26.9
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 2.8e-60 239.2 248 55.6
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 1.8e-59 236.5 333 45.3
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 5.2e-59 235.0 125 98.4
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 2.2e-57 229.6 464 39.7
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.1e-53 217.2 189 60.3
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.1e-52 213.0 328 40.5
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.3e-51 209.5 415 40.5
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 4.1e-48 198.7 618 30.6
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.7e-44 185.3 150 61.3
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 8.4e-33 147.9 99 71.7
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.2e-32 145.6 131 61.8
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 2.8e-28 132.9 73 79.5
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 3.6e-28 132.5 109 65.1
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 3.5e-23 115.9 112 58.9
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 3.5e-23 115.9 112 58.9
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.6e-20 107.1 181 42.0
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.8e-20 105.5 157 46.5
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.8e-19 103.6 140 49.3
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 2.0e-18 100.1 121 48.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 3.4e-18 99.4 68 67.6
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 6.5e-17 95.1 155 44.5
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 6.5e-17 95.1 110 49.1
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.5e-16 93.2 67 67.2
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.6e-12 80.5 141 39.0
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 2.6e-10 73.2 164 36.6
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 1.3e-09 70.9 163 34.4
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 8.4e-09 68.2 94 43.6
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 1.1e-08 67.8 108 42.6
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 1.2e-07 64.3 36 83.3
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.8e-06 60.5 85 43.5
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-06 60.1 78 43.6
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 8.7e-06 58.2 61 39.3


User provided reference genes

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